Glyma19g27500 - SoyBase

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Report for Sequence Feature Glyma19g27500

Feature Type:	gene_model
Chromosome:	Gm19
Start:	34828919
stop:	34838709
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g27500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13280	AT	Annotation by Michelle Graham. TAIR10: aspartate kinase 1 \| chr5:4249516-4252654 FORWARD LENGTH=569	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartate kinase activity	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
KOG0456	KOG	Aspartate kinase	JGI		ISS
PTHR21499	Panther	ASPARTATE KINASE	JGI		ISS
PTHR21499:SF11	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00696	PFAM	Amino acid kinase family	JGI		ISS
UniRef100_I1N803	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartokinase n=1 Tax=Glycine max RepID=I1N803_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N803	UniRef	Annotation by Michelle Graham. Best UniRef hit: Aspartokinase n=1 Tax=Glycine max RepID=I1N803_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g27500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g27500

Paralog	Evidence	Comments
Glyma16g05380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g27500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g102100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g27500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g27500

Limit To All Plant Sequences

>Glyma19g27500.1   sequence type=CDS   gene model=Glyma19g27500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCACTATGCAACTAAGTTGGGTTAGTAAGAGCACGGTCCCCGTGGCTTTGAGTAGAAGAGTGTGTTGTCAATGTCAACCACCCCTGTGGCTGCCATGGCGAATTGGGTTTGTTACTCCCGTTCCCCTTGTGAGGAGAGTTTCGAGTGAGAGGGTGGCGGCACTCAGGGTTAGTTGCAGCAAGGAAACTGAAAGTGATGTGGTTGAGGGTGAAAGTGGGGGCTTTGCGGAAACTGAAATGAGTTACACATGTGTCATGAAGTTTGGTGGCTCCTCGGTTGCCAATGCTGAAAGAATGAGAGAGGTTGCCAACCTTATTCTGAGCTTCCCGGAAGAGAGGCCAATAATTGTTCTCTCTGCCATGGGAAAGACAACTAACATGCTTTTGCTGGCTGGAGAAAAAGCTGTAAGCTGTGGAGTAACTAATGCTGATAGTATTGATGAGCTCAACATAATAAAAGATCTTCATCTCAGGACTGTGGAACAGCTTGGAGTGGACAGAAATGTTATTGAGAAGCATCTAGAAGAATTGGAGCAACTTCTAAAGGGGATAGCTATGATGAAAGAGTTGACTCCACGGACTCAAGACTATTTAGTTTCATTTGGAGAGTGCATGTCCACTAGGATATTTGCTGCATATCTTAATACATTAGGAGTTAAGGCCCGCCAATATGATGCATTTGAGATGGGTATTATAACAACTGATGACTTCACAAATGCTGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTGATTGGGTTTCTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGGCACGAAAATCATGTGCGGTGACAACATTGGGTAGAGGTGGAAGTGATTTAACTGCTACAACAATTGGGAAAGCGCTAGGGTTGCCAGAAATCCAGGTATGGAAAGATGTTGATGGTGTTCTAACCTGTGATCCAAATATATGCCCACAAGCAAAACCTGTTCCATATTTGACATTTGATGAGGCTGCTGAACTTGCATACTTTGGTGCTCAGGTCCTCCATCCACAGTCTATGAGACCGGCTAGGGAAAGTGATATTCCTGTTAGGGTTAAAAATTCATACAACCCTAAAGCTCCAGGTACTCTGATTGCTAAGACAAGGGATATGAGCAAGGCATTATTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAGGTATTTTCAATATTCGAAGAGTTAGGCATATCAGTTGATGTTGTAGCTACAAGTGAAGTTAGTATTTCCTTGACATTGGATCCATCAAAGCTATGGAGCAGAGAGCTAATTCAACAGGAACTTGACTATGTTGTCGAAGAACTGGAAAAAATTGCTGTGGTAAATCTCTTAAAGACCAGATCCATAATCTCTCTCATTGGAAATGTTCAGAAGTCATCACTAATATTGGAGAAGGCCTTTCATGTTCTTCGAACTCTTGGGATCACTGTTCAAATGATCTCTCAGGGTGCATCTAAGGTGAATATCTCGTTAGTTATAAATGACAGTGAAGCAGACCAGTGTGTCAGGGCTCTCCACAAAGCCTTCTTTGAGAGCGAACTCTCTGAATTAGAGAATGAATGCATACCTAGAAATGGTTCGGTTCCTGCATTATCTTAG

Predicted protein sequences of Glyma19g27500

Limit To All Plant Sequences

>Glyma19g27500.1   sequence type=predicted peptide   gene model=Glyma19g27500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTMQLSWVSKSTVPVALSRRVCCQCQPPLWLPWRIGFVTPVPLVRRVSSERVAALRVSCSKETESDVVEGESGGFAETEMSYTCVMKFGGSSVANAERMREVANLILSFPEERPIIVLSAMGKTTNMLLLAGEKAVSCGVTNADSIDELNIIKDLHLRTVEQLGVDRNVIEKHLEELEQLLKGIAMMKELTPRTQDYLVSFGECMSTRIFAAYLNTLGVKARQYDAFEMGIITTDDFTNADILEATYPAVAKRLHSDWVSDPAIPIVTGFLGKARKSCAVTTLGRGGSDLTATTIGKALGLPEIQVWKDVDGVLTCDPNICPQAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLIAKTRDMSKALLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDYVVEELEKIAVVNLLKTRSIISLIGNVQKSSLILEKAFHVLRTLGITVQMISQGASKVNISLVINDSEADQCVRALHKAFFESELSELENECIPRNGSVPALS*

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