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Report for Sequence Feature Glyma19g27450

Feature Type:gene_model
Chromosome:Gm19
Start:34715531
stop:34734357
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g27450
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G13540AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr2:5637053-5642813 FORWARD LENGTH=848 SoyBaseE_val: 0ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006366GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016070GO-bp Annotation by Michelle Graham. GO Biological Process: RNA metabolic process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031053GO-bp Annotation by Michelle Graham. GO Biological Process: primary miRNA processing SoyBaseN/AISS
GO:0048574GO-bp Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000339GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA cap binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1104 KOG Nuclear cap-binding complex, subunit NCBP1/CBP80 JGI ISS
PTHR12412Panther CAP BINDING PROTEIN 80-RELATED JGI ISS
PTHR12412:SF2Panther gb def: putative large subunit of the nuclear cap-binding protein complex cbc schizosac JGI ISS
PF02854PFAM MIF4G domain JGI ISS
PF09088PFAM MIF4G like JGI ISS
PF09090PFAM MIF4G like JGI ISS
UniRef100_I1N7Z9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7Z9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HUL1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Initiation factor eIF-4 gamma, middle n=1 Tax=Medicago truncatula RepID=Q2HUL1_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g27450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g27450
ParalogEvidenceComments
Glyma16g05410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g27450 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g101600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g27450
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g27450
>Glyma19g27450.1   sequence type=CDS   gene model=Glyma19g27450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGTTGGAGAAGCCTTCTTCTACGAATCGGCGACAAGAGCCCTGAATATGGAGTCTCCTCCGACTACAAAGATCACATTGATACGTGCTTTGGCGCCCTTCGCCGCGAGCTCGACCTCTCTCAATCCGAGATTATGGAGTTCCTTCTCATGTGTGCTGAGCAATTGCCTCACAAGATTCCTCTGTATGGTACCCTGATTGGCTTAATTAACTTGGAAAATGAGGACTTTGTGAAACAACTAGTGGTGAAAACTCAAAGTAAATTTCAGGATGCCTTGGATTCTGGAAACTGCAACGGGGTTCGTATTCTAATGCGGCTTTTGACTGTTATGATGAGCAGTAAGGTTCTTCAACCAAGCTCTTTGGTGGCTGTGTTTGAAACATTTTTATCATCAGCTGCCACAACAGTAGATGATGAGAAAGGGAATCCCTTATGGCAGTCATGTGCTGACTTTTACATAACTTGCATTTTATCATGCCTCCCATGGGGTGGAGCAGAACTTATTGAGCAAGTTCCTGAAGATATTGAGAGAGTGATGGTTGGTGTAGAAGCTTACTTGAGCATCAGAAAGCATACATTTGACATCGGATTATCCTTTTTCGAGAATGATGATGAAAACGGGAAAGGTCTTGGTGACAAGGATTTTTTGGAAGATTTATGGGATAGAATACAGGTTTTATCAAGCCATGGATGGAAGGTTGACAGTGTTCCAAGATCTCATCTTTCATTTGAAGCTCAGCTGGTTGCTGGGAAGTCTCATGAATTTGGGCCAATATGCTGCCCCCGCTTACCAAGCCCGCCTTCAGTCCCTTCTGGCGTGTCTATTGGTAAACAGAAGCATGAAGCAGAATTAAAATACCCTCAAAGGATACACCGGCTAAACATATTTCCTCCTGGTAAAATTGAGGATCTACAGCCTATAGACAGATTTGTTATGGAAGAGTATCTCCTAGATGTGCTTCTGTTCTTAAATGGCTGTCGAAAGGAATGTGCTTCTTTCATGGTTGGTCTGCCAGTTTCCTTCAGATATGAGTACCTCATGGCTGAAACAATATTCTCTCAGCTGCTGATGCTACCACAACCACCTTTCAAACCAGTATATTACACACTGGTTATTATTGACCTTTGTAAGGCTCTTCCTGGAGCTTTTCCTGCAGTTGTAGCTGGAGCAGTTCGTACTCTCTTTGAGAGGATTGCTGATTTGGATATGGAGTGTCGGACACGTCTGATCCTTTGGTTCTCACACCATTTATCAAACTTCCAGTTCATCTGGCCTTGGGAAGAGTGGGCTTATGTCCTAGACCTCCCAAGGTGGGCCCCTCAACGCGTCTTTGTTCAGGAGGTTTTGGAGAGGGAAGTTCGCTTGTCATACTGGGACAAAGTTAAGCAGAGTATTGAAAATGCACCTGGTTTAGAAGAATTGCTTCCTCCAAAGGGTGGGCCGAACTTTAGTTTTGGTGCAGAAGATGGTAAAGAAAGCAATGAGCATGTACTGTCTGGACAGCTCAACAACATGGTTAAAGGAAAGGCACCTGTCCGTGAAATAATCTCATGGATTGATGAAAGTGTGTTTCCAAGTAATGGTCTAGAAGTTACTCTCAGAGTGGTTGTACAAACTTTTCTCAATATTGGATCCAAGAGTTTCACTCATTTGATGACTGTCTTAGAGAGATATGGGCAAGTCTTTGCAAAAGTATGTCCCGACCAGGATAAGCAAGTCATGCTGATAGCTGAAGTGAGTGCTTTCTGGAAGAGTAACACCCAAATGACAGCAATAGCTATTGACAGGATGATGGGTTATCGACTTGTTTCAAATCTGGCTATTGTGAGATGGGTCTTCTCAGCAGAAAATATTGAGCAATTTCATACGTCAGATCGTCCATGGGAGATTCTTAGAAATGCAGTAAGCAAGACACACAATCGTATTTCTGATCTAAGGAAAGAAATATTATCTCTTAAAAAGAATTTTTCATCTGCTGAAGAAACTGCAAAGGAGGCAAAAGCAGAGTTAGATGCTGCAGAGTCAAAACTTACACTAGTGGATGGCGAACCAGTTCTTGGTGACAATCCTACTAGATTGAATAGATTGAAATTACATGCTGAAAAGACAAAGAACGAGGTGGTGTCTCTTCAAAAATCTTCAGAAGCCAAGGAAGCTCTTCTTGCCCAAGCAATGGAGGAAAATGAGGCATTGTTTCTCTTGTTGTACAAAAGCTTCTCAAACGTGTTGATAGAGCGCCTTCCTGAAGGAGCTAGAACACTGCATGAGTTGAAGTCTGCACAAGTTGATGTGGTGATGGCAGTGGACCCTGAAGAGCCATCATCAATGGAATTAGACAATGAGAGTCAGAGACCTCAAAACAGTCAAACAAATGGCGAGAAGAAAGGTGGTGCTTATAATGTAGGTGAAAAGGAGCAGTGGTGTATCATCACTTTGGGTTATGTGAAGGCCTTTTCTAGGCAGTATGCCGCTGAGATATGGCCCCATGTTGAAAAGTTGGATGCAGAGGTATTGACAGAAGATGCACCTCTTCTTTTTCGGTCATCTGTTTATTCTGGTCTTCGAAGACCAATTCATGACGCTTGA
Predicted protein sequences of Glyma19g27450
>Glyma19g27450.1   sequence type=predicted peptide   gene model=Glyma19g27450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSWRSLLLRIGDKSPEYGVSSDYKDHIDTCFGALRRELDLSQSEIMEFLLMCAEQLPHKIPLYGTLIGLINLENEDFVKQLVVKTQSKFQDALDSGNCNGVRILMRLLTVMMSSKVLQPSSLVAVFETFLSSAATTVDDEKGNPLWQSCADFYITCILSCLPWGGAELIEQVPEDIERVMVGVEAYLSIRKHTFDIGLSFFENDDENGKGLGDKDFLEDLWDRIQVLSSHGWKVDSVPRSHLSFEAQLVAGKSHEFGPICCPRLPSPPSVPSGVSIGKQKHEAELKYPQRIHRLNIFPPGKIEDLQPIDRFVMEEYLLDVLLFLNGCRKECASFMVGLPVSFRYEYLMAETIFSQLLMLPQPPFKPVYYTLVIIDLCKALPGAFPAVVAGAVRTLFERIADLDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLDLPRWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPKGGPNFSFGAEDGKESNEHVLSGQLNNMVKGKAPVREIISWIDESVFPSNGLEVTLRVVVQTFLNIGSKSFTHLMTVLERYGQVFAKVCPDQDKQVMLIAEVSAFWKSNTQMTAIAIDRMMGYRLVSNLAIVRWVFSAENIEQFHTSDRPWEILRNAVSKTHNRISDLRKEILSLKKNFSSAEETAKEAKAELDAAESKLTLVDGEPVLGDNPTRLNRLKLHAEKTKNEVVSLQKSSEAKEALLAQAMEENEALFLLLYKSFSNVLIERLPEGARTLHELKSAQVDVVMAVDPEEPSSMELDNESQRPQNSQTNGEKKGGAYNVGEKEQWCIITLGYVKAFSRQYAAEIWPHVEKLDAEVLTEDAPLLFRSSVYSGLRRPIHDA*






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