SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14040 | AT | Annotation by Michelle Graham. TAIR10: phosphate transporter 3;1 | chr5:4531059-4532965 REVERSE LENGTH=375 | SoyBase | E_val: 0 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG0767 | KOG | Mitochondrial phosphate carrier protein | JGI | ISS | |
| PTHR24089 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24089:SF22 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00153 | PFAM | Mitochondrial carrier protein | JGI | ISS | |
| UniRef100_O80412 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial phosphate transporter n=1 Tax=Glycine max RepID=O80412_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O80412 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Mitochondrial phosphate transporter n=1 Tax=Glycine max RepID=O80412_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g27380 not represented in the dataset |
Glyma19g27380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g05460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g101100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g27380.3 sequence type=transcript gene model=Glyma19g27380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTAGCGGGGGCATATTGTCCGCAAAACAATTGGCACCACCAAACCAATATAAAGTAGCACGAACGTGCAGCCAATGGCGCACAAATCTCGGAAGCAAACGCAGCATTGGGAGATAGAAAGAGAGAGAGAAAGAGAGAGAGAGAAAGACCCTTACCCTTCTCTATCGCTCGCTTTCCTTTGACGCTTCTGACCCTTGCTTTGTCTGCGTCTTCCTTCTTTCTTTCTTTCTTTCTCTGTGTGTCGTAATGGCTCTCCCAGACTCTTCTTCCCGTCGCAACTCCCTGATCCCCTCCTTCATCTACTCCTCTTCCTCCAAAACGCTCCCTCTCCACCACATGCTCAACACCGCCTCCGCTGCCGCCGCCGCCGCTCCCTCCCCGCCGCCGGCCAATCTCGACGCCGGATCGCGTGGCCTCATGATTCCCTCTCCCAGCGAGTCACGCAAGATCGAGTTGTACTCCCCCGCCTTCTACGCCGCCTGCACCGCCGGTGGAATCCTCAGCTGTGGCCTCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTTAAGGAGCAGGGATTCAGGGGCTTTTTTCGTGGCTGGGTGCCTACCTTGCTTGGTTATAGTGCTCAGGGTGCTTGCAAATTTGGATTTTACGAGTTCTTTAAGAAGTACTATTCTGATATTGCTGGCCCAGAGTATGCAAGCAAGTACAAGACCTTGATCTACCTTGCTGGTTCAGCATCTGCTGAGGTTATTGCTGATATTGCTCTTTGCCCATTTGAGGCTGTGAAGGTCCGTGTCCAAACTCAGCCTGGTTTTGCAAGGGGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCATACACAATGATGAAGTTTGCTTCTTTTGAGACCATTGTTGAGCTGATCTATAAGCATGCCATCCCAACACCAAAGAATGAGTGCACCAAAAGCCTGCAACTTGGTGTCAGTTTTGCTGGTGGATATGTTGCTGGTGTACTTTGTGCAATTGTGTCTCATCCTGCTGATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGAGCTAGCAAAGGCATAGAATGTCCAATGATGACAAGCAACAATGTTGTACGAAACTTAGAAAGCCAGTGAATAGGGACCATAAATAAATAGAGGACTGCTGAATGAAGTTGCTTGAGTGGAACTCAAGCTTGGTTGGATAATATTCTTTTAAAGTTCAGACATTGTTTCCATTTTTCTTATATTTAAGTATTTTGAATTTTTGGGAGGATGGTTTTGCTCTCATCCTTCCACTTGCTGAAAACTTTGTAGGTAGGAATGATATAATTTTGCATGTTAGGTTCTCTACATGCCAATTGTCAAACGGGAACACATTTGTTTTCTTGTCTGTGCATAAGCACCGACACATATGCAATGCCTAGATTGAGATCATTTATACTCGCTAGTTTTACTTGATTATTTGTCGTTTGGAAAATATACATCTTTTTTGTTGCATTACGTTTTATTGTATTGCTATCATCAGCTCTCTTCAACGACTGTTATCATGCCAGATTCATGAGTGAACTGCCAGACATTTCATCCCTTGGTTCCTGGGACAAATGCAAAAATGATGAGAATATAGTTTGTTGCGCCGCCATTACAAGCGATACAGAATCCAGTCACCTATCGATATGCTGGACTTCTCCTTTTGGGTCTTGAATGATTTTGAGCTGATGCATATATTAAGATTGCACACCAAAAGCCACGAGATTTAGGTTAAGGGTCTGGCTGCCCTAAGAAGGTAAGAACATGATTCAAGCTCATTGAGCTGGGATTTGTAAATAACCAATTCCGAGAAGAGGCCATCGGGTGGGTTCTCAGTTGACTTTAATTAGGACTACGAATGAATTTGATTATGAATATCGGAAGCGAGGAATTCAGTTTTTTTCATTAACTTGCAAAATTTATTTTACAGAGAAATTTTTTTTAATAGCTTTTAGCTTTTTTGGAAGTGCTTTTTTTAAAACATTAGTTTTTAATTTTTTTATATTTATC
>Glyma19g27380.2 sequence type=CDS gene model=Glyma19g27380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCCCAGACTCTTCTTCCCGTCGCAACTCCCTGATCCCCTCCTTCATCTACTCCTCTTCCTCCAAAACGCTCCCTCTCCACCACATGCTCAACACCGCCTCCGCTGCCGCCGCCGCCGCTCCCTCCCCGCCGCCGGCCAATCTCGACGCCGGATCGCGTGGCCTCATGATTCCCTCTCCCAGCGAGTCACGCAAGATCGAGTTGTACTCCCCCGCCTTCTACGCCGCCTGCACCGCCGGTGGAATCCTCAGCTGTGGCCTCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTTAAGGAGCAGGGATTCAGGGGCTTTTTTCGTGGCTGGGTGCCTACCTTGCTTGGTTATAGTGCTCAGGGTGCTTGCAAATTTGGATTTTACGAGTTCTTTAAGAAGTACTATTCTGATATTGCTGGCCCAGAGTATGCAAGCAAGTACAAGACCTTGATCTACCTTGCTGGTTCAGCATCTGCTGAGGTTATTGCTGATATTGCTCTTTGCCCATTTGAGGCTGTGAAGGTCCGTGTCCAAACTCAGCCTGGTTTTGCAAGGGGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCATACACAATGATGAAGTTTGCTTCTTTTGAGACCATTGTTGAGCTGATCTATAAGCATGCCATCCCAACACCAAAGAATGAGTGCACCAAAAGCCTGCAACTTGGTGTCAGTTTTGCTGGTGGATATGTTGCTGGTGTACTTTGTGCAATTGTGTCTCATCCTGCTGATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGAGCTAGCAAAGGCATAG >Glyma19g27380.3 sequence type=CDS gene model=Glyma19g27380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCCCAGACTCTTCTTCCCGTCGCAACTCCCTGATCCCCTCCTTCATCTACTCCTCTTCCTCCAAAACGCTCCCTCTCCACCACATGCTCAACACCGCCTCCGCTGCCGCCGCCGCCGCTCCCTCCCCGCCGCCGGCCAATCTCGACGCCGGATCGCGTGGCCTCATGATTCCCTCTCCCAGCGAGTCACGCAAGATCGAGTTGTACTCCCCCGCCTTCTACGCCGCCTGCACCGCCGGTGGAATCCTCAGCTGTGGCCTCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTTAAGGAGCAGGGATTCAGGGGCTTTTTTCGTGGCTGGGTGCCTACCTTGCTTGGTTATAGTGCTCAGGGTGCTTGCAAATTTGGATTTTACGAGTTCTTTAAGAAGTACTATTCTGATATTGCTGGCCCAGAGTATGCAAGCAAGTACAAGACCTTGATCTACCTTGCTGGTTCAGCATCTGCTGAGGTTATTGCTGATATTGCTCTTTGCCCATTTGAGGCTGTGAAGGTCCGTGTCCAAACTCAGCCTGGTTTTGCAAGGGGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCATACACAATGATGAAGTTTGCTTCTTTTGAGACCATTGTTGAGCTGATCTATAAGCATGCCATCCCAACACCAAAGAATGAGTGCACCAAAAGCCTGCAACTTGGTGTCAGTTTTGCTGGTGGATATGTTGCTGGTGTACTTTGTGCAATTGTGTCTCATCCTGCTGATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGAGCTAGCAAAGGCATAG
>Glyma19g27380.2 sequence type=predicted peptide gene model=Glyma19g27380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALPDSSSRRNSLIPSFIYSSSSKTLPLHHMLNTASAAAAAAPSPPPANLDAGSRGLMIPSPSESRKIELYSPAFYAACTAGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGFRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYASKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGTLGLYKGLVPLWGRQIPYTMMKFASFETIVELIYKHAIPTPKNECTKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPAPAAAPAPGSELAKA* >Glyma19g27380.3 sequence type=predicted peptide gene model=Glyma19g27380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALPDSSSRRNSLIPSFIYSSSSKTLPLHHMLNTASAAAAAAPSPPPANLDAGSRGLMIPSPSESRKIELYSPAFYAACTAGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGFRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYASKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGTLGLYKGLVPLWGRQIPYTMMKFASFETIVELIYKHAIPTPKNECTKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPAPAAAPAPGSELAKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
