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Report for Sequence Feature Glyma19g27280

Feature Type:gene_model
Chromosome:Gm19
Start:34555783
stop:34559164
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g27280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12820AT Annotation by Michelle Graham. TAIR10: auxin signaling F-box 3 | chr1:4368879-4370780 REVERSE LENGTH=577 SoyBaseE_val: 0ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010152GO-bp Annotation by Michelle Graham. GO Biological Process: pollen maturation SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0048527GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root development SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0071249GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitrate SoyBaseN/AISS
GO:0080022GO-bp Annotation by Michelle Graham. GO Biological Process: primary root development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0010011GO-mf Annotation by Michelle Graham. GO Molecular Function: auxin binding SoyBaseN/AISS
KOG1947 KOG Leucine rich repeat proteins, some proteins contain F-box JGI ISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF17Panther GRR1-RELATED, ARATH JGI ISS
PF00646PFAM F-box domain JGI ISS
UniRef100_G7KW81UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein AUXIN SIGNALING F-BOX n=1 Tax=Medicago truncatula RepID=G7KW81_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N7Y8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7Y8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g27280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g27280
ParalogEvidenceComments
Glyma16g05500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g27280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g100200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g27280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g27280
>Glyma19g27280.1   sequence type=CDS   gene model=Glyma19g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAATTATTTCCCCGACGAGGTAATAGAGCACATATTTGACTATGTGGTGTCACACAGTGACAGAAATGCTTTGTCTTTGGTGTGCAAAAGTTGGTACAGAATAGAGAGGTGTACGAGGCAAAGGGTGTTCATAGGGAACTGTTACTCCATCACTCCAGAGAGGTTGATCCAGAGGTTTCCTGGTCTAAAGTCTTTGACTTTGAAGGGAAAGCCTCATTTTGCTGACTTCAGTTTGGTGCCTTATGATTGGGGTGGCTTTGTGCATCCATGGGTTGAGGCACTGGCCAAGAGCAGGGTTGGTTTGGAGGAGCTTAGGCTCAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCACACACTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCTCTACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGGTTCCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAGGATCACAAAGGCCAATGGCTAAGTTGCTTTCCTGATAACTGCACATCACTTGTTTCTCTTAATTTTGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCACTAGAGAGATTTGTGGCCAGATCTCCTAACCTGAAGAGTTTAAAGCTGAATCGTTCGGTGCCCGTTGATGCACTGCAAAGGATAATGATGCGAGCACCTCAACTATCGGATTTGGGTATTGGATCACTTGTCCATGATCCAGAATCGGAGGCCTACATAAAGCTTAAGAATACCATTCTCAAGTGCAAGTCCATAACCAGTTTGTCTGGGTTTTTGGAAGTTGCTCCTCATTGTCTTGCAGCTATATATCCTATTTGCCCGAACTTAACATCTTTGAACTTGAGCTATGCAGCAGGCATTCAGGGAAGTGCTCTGGTAAAACTAATTCATCACTGTGTTAAACTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTACGACATGTAAAGATTTGCAAGAATTGAGGGTTTTTCCATCTGTTCCCTTTGGGGATCCAGCAGCTGTCACAGAAAAAGGGCTGGTTGCAATATCAATGGGCTGCCCTAAGCTTCACTCGTTACTCTACTTCTGCCACCAGATGACAAATGCTGCACTCATAACAGTGGCTAAGAACTGCCCAAATTTTATTCGATTCAGGTTGTGTATCCTTGATGCAACAAAACCTGACCCTGATACAATGCAGCCACTGGACGAAGGTTTTGGCGCAATTGTGCAGTCTTGCAGGCGACTCAGGCGCCTATCTCTCTCGGGGAAATTGACTGACCAGGTTTTCCTTTACATAGGAATGTATGCTGAGAAACTTGAAATGCTGTCTATTGCATTTGCTGGGGATGGTGACAAGGGAATGCTGTATGTGTTGAATGGATGCAAGAAGCTTAGGAAGCTTGAGATAAGAGACTGCCCTTTTGGCGACATGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTGACTGTCGGAGCCTGCAAGTTGCTAGCCAAGAAGATGCCAAGGTTGAATGTGGAGATCTTCAATGAAAACGAGCAAGAAGATTGTAGTCTGGAAGATGGGCAGAAGGTAGAGAAGATGTATTTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCAGAATATGTATGGACTCTGTAG
Predicted protein sequences of Glyma19g27280
>Glyma19g27280.1   sequence type=predicted peptide   gene model=Glyma19g27280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNYFPDEVIEHIFDYVVSHSDRNALSLVCKSWYRIERCTRQRVFIGNCYSITPERLIQRFPGLKSLTLKGKPHFADFSLVPYDWGGFVHPWVEALAKSRVGLEELRLKRMVVSDESLELLSRSFTHFKSLVLVSCEGFSTDGLAAIAANCRFLRELDLQENEVEDHKGQWLSCFPDNCTSLVSLNFACLKGEVSLGALERFVARSPNLKSLKLNRSVPVDALQRIMMRAPQLSDLGIGSLVHDPESEAYIKLKNTILKCKSITSLSGFLEVAPHCLAAIYPICPNLTSLNLSYAAGIQGSALVKLIHHCVKLQRLWIMDCIGDKGLGVVATTCKDLQELRVFPSVPFGDPAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCRRLRRLSLSGKLTDQVFLYIGMYAEKLEMLSIAFAGDGDKGMLYVLNGCKKLRKLEIRDCPFGDMALLTDVGKYETMRSLWMSSCEVTVGACKLLAKKMPRLNVEIFNENEQEDCSLEDGQKVEKMYLYRTLAGKRKDAPEYVWTL*






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