Glyma19g27240 - SoyBase

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Report for Sequence Feature Glyma19g27240

Feature Type:	gene_model
Chromosome:	Gm19
Start:	34518709
stop:	34522156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g27240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33500	AT	Annotation by Michelle Graham. TAIR10: B-box type zinc finger protein with CCT domain \| chr2:14188159-14190046 REVERSE LENGTH=401	SoyBase	E_val: 6.00E-66	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_G7KW76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein CONSTANS-like protein n=4 Tax=Medicago truncatula RepID=G7KW76_MEDTR	SoyBase	E_val: 2.00E-152	ISS
UniRef100_UPI000233E5C1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E5C1 related cluster n=1 Tax=unknown RepID=UPI000233E5C1	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma19g27240

Locus	Gene Symbol	Protein Name
	COL13b	Constans-like 13b

Expression Patterns of Glyma19g27240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g27240

Paralog	Evidence	Comments
Glyma16g05540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g27240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g099700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g27240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g27240

Limit To All Plant Sequences

>Glyma19g27240.1   sequence type=CDS   gene model=Glyma19g27240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCCATGCGACTACTGCGACTCCAAACCCGCCTTACTCTTCTGCCGAGCTGATTCCGCTAAACTCTGTTTAGTTTGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGTCCGACACCGCCGTCCTCCGCTGCTCCACCCACAACCTCGTCCTCTGTCACAACTGCGACGTGGACGCCCACGGTGCCGACGCTTCATCCCTCCACCACCACCACCACCACCACCGCCGCCTTCACGGCCTCTCCGGCTGTCCCTCCGTCCCGGAGATCGCCTCCGCGCTGGGCCTTGATTTCCGGGCCCAGGAGCCCGTGGTCCCCACCGCCGCCTCCCGCGATGAGGTCTATGAGCAGGTGCTGGAAATTGCGCGCCAGAGGAACAACGGCCTCGGCGCCGAACAACTCAAGTTCGACGACTCACCCGGAAACGACGTCGTTGTTGTTGTTGACGAGATGCTGATTCAGCAGACGCCGTTCACCTCCTTGCTTATGTTGCAGAATTCTGAATCTGAGTTTGACGCTAGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCATGGGATCTTCACTGGAATTATAATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAATTACAAAAATCAACAGATTGCAATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTGTTTCAGGATGTGCACAACATGAATTACTCAACAATTGGTGATGATATTGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAGGAAAGAAGAGAGCAACAAAAAAGCTAGAGGTGGGTTATCATCAGAGTCCACATTGTTTGAATCCATACCGTATAGTGGCACCAACAATGTCGTTGTCATGGAGCATCTTGTGGGTGGGAATGAGAATGTTAGCACCTTAAAAGCCAGGGTTAGTTTGCAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACGCGAAGGTACGACAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAAAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCATGA

Predicted protein sequences of Glyma19g27240

Limit To All Plant Sequences

>Glyma19g27240.1   sequence type=predicted peptide   gene model=Glyma19g27240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPCDYCDSKPALLFCRADSAKLCLVCDQHVHAANALSLKHVRFQICDSCKSDTAVLRCSTHNLVLCHNCDVDAHGADASSLHHHHHHHRRLHGLSGCPSVPEIASALGLDFRAQEPVVPTAASRDEVYEQVLEIARQRNNGLGAEQLKFDDSPGNDVVVVVDEMLIQQTPFTSLLMLQNSESEFDARKSNDNNGYGTEAWDLHWNYNNPAYQPPQVWDFQLQKSTDCNEPRVVTFDGLEVPKLFQDVHNMNYSTIGDDIDILSRNNQSDQSSSSHAKRKEESNKKARGGLSSESTLFESIPYSGTNNVVVMEHLVGGNENVSTLKARVSLQELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA*

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