SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G26890 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1). | chr3:9907456-9910463 REVERSE LENGTH=648 | SoyBase | E_val: 3.00E-57 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2306 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13199 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR13199:SF9 | Panther | UNKNOWN PROTEIN | JGI | ISS | |
| UniRef100_C0Z2U8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT3G26890 protein n=1 Tax=Arabidopsis thaliana RepID=C0Z2U8_ARATH | SoyBase | E_val: 1.00E-54 | ISS |
| UniRef100_I1N7W1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N7W1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g26870 not represented in the dataset |
Glyma19g26870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g05600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g097300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g26870.3 sequence type=transcript gene model=Glyma19g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATTAAGGAATACTTGTTCTCAAGTTAACAGAGCTCTGCTCATAAGTTGAGTCTTGCAGGAAATTCCTCTTCAAACAAGTTTAGAGGCCAATTGCGTGGAAAAAATGATTCCCAAATTGTAAAAAGCCGTTTGCGTATACCAATGAAGGGACGGATTCAACTGGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAACATTCTTGCGCCAGAAAGTCACCCTTGAATTGACTGGCTCTACTTCCCCTCAGTTGAAACAGAGATCAACAGGTTTAAACAGTGGAATTGACAAGGGGATTCCATCAATGCAAAAGAATCATGACATCTCATGTGATGGAGAAGTAATGCATACAGATGCAGCTAATGTTATAAATAAAACAAAATCTACAAATCAGGGAAATGGAAAGGGTTCTAGCTTGTTGAATTTAATAAACAAAGAGGATTCTTTGAAGCAATCTTTGAAAACAAAAACACTGGGAGCCCCTTCCTCAGTGAAGCTTGATTATGAGTGTATTACTGATAAATGTGAGAGGAATGAAAGAAAGGAGTGTTGGGATAAAACATGTCATGAATCAGGGAAACCACTAAATTCCTGTTCAAAGGTGAAGGACAATTCTAGTAGTGGGGGTCCTCTTCGTTATGCTCTCCACCTACGCTTTATTTGCCCTATTCCTAAAAAGACCATCAGATCAGCTCAAAAAAGCAAAAATAATTCACTTCAAGAAAAATCTAGATTGGACATGGAAGGGGAACGAAGATTCTACTTATGTAATGATTTGAGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAGTTGAACGTGGAATACCATTTCCCTGAAGATCCAAGATACTTTGACATCAACTGAAAATTCTAGTTTAACCCCTCAAAAAAAACATGCTGCTTTTGCTGACCCTCTAGTACATAATCACAAGTTTGTCTTCATGACTCATGTCCTCTGGAAAAATAGTACTAACCCTTTTCCTGATGTAAATACTTAAACAATTTCAATAATTTAATGGGTTAACTATTTTCAATTGCTGACTTAACTTAGCTATTACCATGAAAAGTGGATGTTGAAATGCCTGGTGGAACTTGATTGTCCCACCCTAGTTATTTTCCAGACCCAAAGCAGCATTTTAAGGACGTGTTAACTATAAAAATTGAGTCTAAATGAAAGAAAATTGGTAAGATGAGAGGAAGTTGCTTTGTTACCCACATTATTCCTTAG
>Glyma19g26870.1 sequence type=CDS gene model=Glyma19g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCTTGCCACAGATTCCCCCAAATGAAACTGCTGAAAAGGTTGCACTTGTGGGTGCAGCTTTAACTAGCTCGCCACATTTTTCTGATGCAAGCCCCTCTGCCATAAACAGCTTGAACAGTGTAAACACTGGTGGGTTGGCTGGGTGTACTCTGGGATCTTCATTTGATGATTTCCCGAAGAATGCCTCCTTAGAAATTTCAAATGTTTCTGACGATACATTTTATAGAGGAGCCATGGAAGTCGCTTCCAATGTCCACAGTTTGAAGATTGGTTCAACAGATAAAAGTACTCCTTTTGCTCCAAAAAGTGGACGCAATGTTCATATTCCTGCTTTAAGGGTTGTTGGTTTTGAATCAGGCCAAACTAATACTTCAACCGATGGTTTGGCTGATGTTTCAGTTGTAAATCTTCATTCTTCCGTTTCTACTAATTTCCCAGCCAATGACAACGAGTCAGCCAGTTCATTGGTCAGGAAGCGACTTTTATCTCCACTGAGCAGTATCCTCTCCCCAAGTCATTTCAAAGGTGATCCTCTTGACATTGGCTGCAGAAATAATGAGACTGGATCCCTTGTTAAGAATGACAATGTTAGAAATTCCATTGCACATGATAATAAGAAGGCAAATATTGGAAGTAAAAGCAGTTATACAATGTCTTCTTGGTCCTTGACAAATTGCTTGGAGCAAAGAATCGTGCCACACAGTACAGAATCCTTTTTTCAAAGTGATGGTCCTTTGAAGGAAAATAGAGGACTTCTGTCTCAGGGTAGTTCACCCACTGCTGGAATTGATCACTTTAGTGAATTGAGTCAGGTTAGGCCTCAAAATGGCATAACATCCATATCTCCTAAAAATGTGAGCTCTCCTCTGTCCTTGTCACCTCTTGGTCGTAAATTCTCGGAAAGAATAAAAACTGCTGGAGGATGTAGGAATGTTGTTGAAGAGATAAAGAATTGCAATATAACTTCAAGGAGTATAGAACAATCACTTGACAATTCCAATTCACGTCTCATGTTAAATTATAAGGATGATGATTCCAGAGTTGCACGCAAATCTTTTGATGATGTTGAATTCTTATGCAAAGATTTCTGTCCATCTTCTCTGGATGACATTGCCGACATGAGTTGGCCACTATGTCAAGAATCAGCTCCCACTTCTCACTCGATGAGATTCACTAGAAGTTTGAGTGGGCTTTCGGTCAGGAGGTCTTTAGTTGGTTCATTTGAGGAGTCTCTTTTATCTGGCCGGTTCTTATCTGGAAACAATAGCAAGTTGAGTCTTGCAGGAAATTCCTCTTCAAACAAGTTTAGAGGCCAATTGCGTGGAAAAAATGATTCCCAAATTGTAAAAAGCCGTTTGCGTATACCAATGAAGGGACGGATTCAACTGGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAACATTCTTGCGCCAGAAAGTCACCCTTGAATTGACTGGCTCTACTTCCCCTCAGTTGAAACAGAGATCAACAGGTTTAAACAGTGGAATTGACAAGGGGATTCCATCAATGCAAAAGAATCATGACATCTCATGTGATGGAGAAGTAATGCATACAGATGCAGCTAATGTTATAAATAAAACAAAATCTACAAATCAGGGAAATGGAAAGGGTTCTAGCTTGTTGAATTTAATAAACAAAGAGGATTCTTTGAAGCAATCTTTGAAAACAAAAACACTGGGAGCCCCTTCCTCAGTGAAGCTTGATTATGAGTGTATTACTGATAAATGTGAGAGGAATGAAAGAAAGGAGTGTTGGGATAAAACATGTCATGAATCAGGGAAACCACTAAATTCCTGTTCAAAGGTGAAGGACAATTCTAGTAGTGGGGGTCCTCTTCGTTATGCTCTCCACCTACGCTTTATTTGCCCTATTCCTAAAAAGACCATCAGATCAGCTCAAAAAAGCAAAAATAATTCACTTCAAGAAAAATCTAGATTGGACATGGAAGGGGAACGAAGATTCTACTTATGTAATGATTTGAGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAGGTGCAGGCAGATAAGATTGATGTCTTGGTTTGTGTGTATTGTGCAATTTGGAATCTATTTGTTCGCATTTCTTGGTCCTCCTAG >Glyma19g26870.3 sequence type=CDS gene model=Glyma19g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGGACGGATTCAACTGGTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGTTGGTACCAAAACATTCTTGCGCCAGAAAGTCACCCTTGAATTGACTGGCTCTACTTCCCCTCAGTTGAAACAGAGATCAACAGGTTTAAACAGTGGAATTGACAAGGGGATTCCATCAATGCAAAAGAATCATGACATCTCATGTGATGGAGAAGTAATGCATACAGATGCAGCTAATGTTATAAATAAAACAAAATCTACAAATCAGGGAAATGGAAAGGGTTCTAGCTTGTTGAATTTAATAAACAAAGAGGATTCTTTGAAGCAATCTTTGAAAACAAAAACACTGGGAGCCCCTTCCTCAGTGAAGCTTGATTATGAGTGTATTACTGATAAATGTGAGAGGAATGAAAGAAAGGAGTGTTGGGATAAAACATGTCATGAATCAGGGAAACCACTAAATTCCTGTTCAAAGGTGAAGGACAATTCTAGTAGTGGGGGTCCTCTTCGTTATGCTCTCCACCTACGCTTTATTTGCCCTATTCCTAAAAAGACCATCAGATCAGCTCAAAAAAGCAAAAATAATTCACTTCAAGAAAAATCTAGATTGGACATGGAAGGGGAACGAAGATTCTACTTATGTAATGATTTGAGGGTTGTGTTCCCTCAACGTCATTCTGATGCCGATGAGGGCAAGTTGAACGTGGAATACCATTTCCCTGAAGATCCAAGATACTTTGACATCAACTGA
>Glyma19g26870.1 sequence type=predicted peptide gene model=Glyma19g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLPQIPPNETAEKVALVGAALTSSPHFSDASPSAINSLNSVNTGGLAGCTLGSSFDDFPKNASLEISNVSDDTFYRGAMEVASNVHSLKIGSTDKSTPFAPKSGRNVHIPALRVVGFESGQTNTSTDGLADVSVVNLHSSVSTNFPANDNESASSLVRKRLLSPLSSILSPSHFKGDPLDIGCRNNETGSLVKNDNVRNSIAHDNKKANIGSKSSYTMSSWSLTNCLEQRIVPHSTESFFQSDGPLKENRGLLSQGSSPTAGIDHFSELSQVRPQNGITSISPKNVSSPLSLSPLGRKFSERIKTAGGCRNVVEEIKNCNITSRSIEQSLDNSNSRLMLNYKDDDSRVARKSFDDVEFLCKDFCPSSLDDIADMSWPLCQESAPTSHSMRFTRSLSGLSVRRSLVGSFEESLLSGRFLSGNNSKLSLAGNSSSNKFRGQLRGKNDSQIVKSRLRIPMKGRIQLVLSNPEKTPLHTFFCNYDLSDMPVGTKTFLRQKVTLELTGSTSPQLKQRSTGLNSGIDKGIPSMQKNHDISCDGEVMHTDAANVINKTKSTNQGNGKGSSLLNLINKEDSLKQSLKTKTLGAPSSVKLDYECITDKCERNERKECWDKTCHESGKPLNSCSKVKDNSSSGGPLRYALHLRFICPIPKKTIRSAQKSKNNSLQEKSRLDMEGERRFYLCNDLRVVFPQRHSDADEGKVQADKIDVLVCVYCAIWNLFVRISWSS* >Glyma19g26870.3 sequence type=predicted peptide gene model=Glyma19g26870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGRIQLVLSNPEKTPLHTFFCNYDLSDMPVGTKTFLRQKVTLELTGSTSPQLKQRSTGLNSGIDKGIPSMQKNHDISCDGEVMHTDAANVINKTKSTNQGNGKGSSLLNLINKEDSLKQSLKTKTLGAPSSVKLDYECITDKCERNERKECWDKTCHESGKPLNSCSKVKDNSSSGGPLRYALHLRFICPIPKKTIRSAQKSKNNSLQEKSRLDMEGERRFYLCNDLRVVFPQRHSDADEGKLNVEYHFPEDPRYFDIN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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