SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g25360

Feature Type:gene_model
Chromosome:Gm19
Start:31571762
stop:31579663
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g25360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40870AT Annotation by Michelle Graham. TAIR10: uridine kinase/uracil phosphoribosyltransferase 1 | chr5:16375021-16378384 FORWARD LENGTH=486 SoyBaseE_val: 0ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0044206GO-bp Annotation by Michelle Graham. GO Biological Process: UMP salvage SoyBaseN/AISS
GO:2000904GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of starch metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004845GO-mf Annotation by Michelle Graham. GO Molecular Function: uracil phosphoribosyltransferase activity SoyBaseN/AISS
GO:0004849GO-mf Annotation by Michelle Graham. GO Molecular Function: uridine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
KOG4203 KOG Armadillo/beta-Catenin/plakoglobin JGI ISS
PTHR10285Panther URIDINE KINASE RELATED JGI ISS
PF00156PFAM Phosphoribosyl transferase domain JGI ISS
PF00485PFAM Phosphoribulokinase / Uridine kinase family JGI ISS
UniRef100_I1MLJ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Uridine kinase n=2 Tax=Glycine max RepID=I1MLJ3_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0001E40407UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001E40407 related cluster n=1 Tax=unknown RepID=UPI0001E40407 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g25360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g25360
ParalogEvidenceComments
Glyma16g06250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g25360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g089100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g25360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g25360
>Glyma19g25360.2   sequence type=transcript   gene model=Glyma19g25360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAACAAACGAGTTGCATAACACAAGGCATGTTCGACGCATTCCACATTTCTTTCATATACTACCAGTCACATTTCTTATACAGAAAAGCAGTGTCTGCAGCACCCAAACGAAACGACAGTGACCAAAACAGCAAAACGACATTACAGAGAGAGAGCGACGATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCGGCATCTGGGCCCCACTTCTCCGGCCTGAGACTTGACGGCCGTATGCCGTCCTCCGCCACCGCCGCCGCCGCGTCCTCCTCTGCCGATTCTACCCTAACCCCCGATTTCCTCCCCAATCAACCCTTCGTCATAGGTGTTTCGGGAGGTACTGCCTCGGGAAAAACCACCGTCTGCGACATGATAATTCAGCAACTTCACGATCACCGCGTTGTTCTCGTCAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGCGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGATGAAGCTTATCAGTGGCCAGGGCGTGCATGTTCCCATTTACGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCTTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCACGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAATGGAGAGAGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTACGCTGACGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGCCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTCGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACCGGTGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGCAAAGGTATTAAAATTGGTAAAATTTTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAAAAGCTCCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAGTCACATTATATTCTTGAATCTCATTTCTGTGAGTTAATTCTGATGCCTTCTTTGTCTGATATTATCATTGTTATTTGACTATCTTTTTGCGCTGTTTACATACATGGATCTTGTGAATCTTTTTGAATTCAGGCTCCTGAGGGAATCCACTGCGTGTGTAAAAGGTTTCCATCATTGAAGATTGTCACGTCTGAGATTGACATTGAAATAAACGAAGAGTATCGTGTTATCCCAGGATTGGGGGAATTTGGTGATCGATACTTTGGTACCGATGATTGATCCTGCTGTTTGTGTGTCTTAAGGTGCAGACACCTCTTGGGTAGCAGCTGCCTTGATTAAGAATATGAGAATCAGCTAACTACATTGTATTCAGATATTAAGGATTCTGCAAAAATCAGCATGATTGTGATTTGAGGCAGGCCGATTACAATTATCAATGCAAACCTACTCCAAGGTTGATATGCACGAATAAATATTAAATGTAGAGATCATTCTTAGCAAGATGATGATACCTGACACAATTCTACCAATCTTGTTCTCCAAAGTTGGTTATGTGGAAAATATTTCCTAGTTATCAATGCAATCTATAACCAACCAGATCAATCGTCAATATATGCAAACTGTGTTATTGTATTTC
Coding sequences of Glyma19g25360
>Glyma19g25360.1   sequence type=CDS   gene model=Glyma19g25360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCGGCATCTGGGCCCCACTTCTCCGGCCTGAGACTTGACGGCCGTATGCCGTCCTCCGCCACCGCCGCCGCCGCGTCCTCCTCTGCCGATTCTACCCTAACCCCCGATTTCCTCCCCAATCAACCCTTCGTCATAGGTGTTTCGGGAGGTACTGCCTCGGGAAAAACCACCGTCTGCGACATGATAATTCAGCAACTTCACGATCACCGCGTTGTTCTCGTCAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGCGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGATGAAGCTTATCAGTGGCCAGGGCGTGCATGTTCCCATTTACGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCTTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCACGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAATGGAGAGAGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTACGCTGACGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGCCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTCGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACCGGTGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGCAAAGGTATTAAAATTGGTAAAATTTTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAAAAGCTCCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAGTCACATTATATTCTTGAATCTCATTTCTGCTCCTGAGGGAATCCACTGCGTGTGTAAAAGGTTTCCATCATTGAAGATTGTCACGTCTGAGATTGACATTGAAATAAACGAAGAGTATCGTGTTATCCCAGGATTGGGGGAATTTGGTGATCGATACTTTGGTACCGATGATTGA

>Glyma19g25360.2   sequence type=CDS   gene model=Glyma19g25360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCGGCATCTGGGCCCCACTTCTCCGGCCTGAGACTTGACGGCCGTATGCCGTCCTCCGCCACCGCCGCCGCCGCGTCCTCCTCTGCCGATTCTACCCTAACCCCCGATTTCCTCCCCAATCAACCCTTCGTCATAGGTGTTTCGGGAGGTACTGCCTCGGGAAAAACCACCGTCTGCGACATGATAATTCAGCAACTTCACGATCACCGCGTTGTTCTCGTCAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGCGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGATGAAGCTTATCAGTGGCCAGGGCGTGCATGTTCCCATTTACGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCTTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCACGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAATGGAGAGAGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTACGCTGACGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGCCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTCGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACCGGTGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGCAAAGGTATTAAAATTGGTAAAATTTTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAAAAGCTCCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAGTCACATTATATTCTTGAATCTCATTTCTGTGAGTTAA
Predicted protein sequences of Glyma19g25360
>Glyma19g25360.1   sequence type=predicted peptide   gene model=Glyma19g25360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEETTSIDYVMEAASGPHFSGLRLDGRMPSSATAAAASSSADSTLTPDFLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLNPEELERVHEYNFDHPDAFDTEQLLECTMKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDTDADVRLARRIRRDTMERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNAYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDIEINEEYRVIPGLGEFGDRYFGTDD*

>Glyma19g25360.2   sequence type=predicted peptide   gene model=Glyma19g25360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEETTSIDYVMEAASGPHFSGLRLDGRMPSSATAAAASSSADSTLTPDFLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLNPEELERVHEYNFDHPDAFDTEQLLECTMKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDTDADVRLARRIRRDTMERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNAYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISVS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo