Glyma19g25332 - SoyBase

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Report for Sequence Feature Glyma19g25332

Feature Type:	gene_model
Chromosome:	Gm19
Start:	31503958
stop:	31507809
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g25332

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01860	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:303767-304329 FORWARD LENGTH=159	SoyBase	E_val: 6.00E-22	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N7Q1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7Q1_SOYBN	SoyBase	E_val: 3.00E-177	ISS
UniRef100_Q9SGI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F28J7.19 protein n=2 Tax=Arabidopsis thaliana RepID=Q9SGI5_ARATH	SoyBase	E_val: 3.00E-19	ISS

Expression Patterns of Glyma19g25332

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g25332 not represented in the dataset	Glyma19g25332 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g25332

Paralog	Evidence	Comments
Glyma16g06310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g25332 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g088700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g25332

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g25332

Limit To All Plant Sequences

>Glyma19g25332.1   sequence type=CDS   gene model=Glyma19g25332   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAGTTGGTATGGCATATTTTTTTGTGATGCAACCCCCTTTCCTTTGAAAGCCAATCACCTCTTACTTTCACCAATCTTTTCTTCTTCTCCCTTCCATTGGGCGTTTTACTTTTCTTTTCTTACCAACGCATTTTTCTTCTTCTCTTTCCCAGCCTTTGCCATAACGCCAAAACAAAACTCCTTCATTTTATTCTCTTCTTCTCTCCCCACTCCCACTTTGCTCATTCTTCGCCCCTCTTCTCTCTCTCTCACTTCCACTCCACTCTTCTCTCTCTCTCACACACACCATGAACTCTTCTTATTATATGCTGCAAGCTGGTGCTTCTTCCTCTTGAACAGTGAAATGGGTTTGTGTTCTTCTGTCCACCGAAACGAGCAAACAAACATGAAGCATCTAACGCTCTCTTTTGAGTCCAAAACTGAAAGCCTTGTGATTCCTCCATCACCCTTCAAAGACAAAGACAAAGCCATAAACGGAAACTTTGTGGTGGCTGATGATGATGCTGCGTTTAAGGCTCAGCAGTGGTCACCCTCTCGGTCAACCACAACCTTCTCGGTCACAGACTGTGGGGATAACGATGGCAAAGAGGAATCATTTTTTGATTCAAAGGCCTGGTTAGACTCAGATTGTGACGATGATTTCTATAGTGTAAAGGGTGAGTTTACCCCATCTCGTGGCAGCACTCCGGTGCACCACATTTTTCTCAATAAAACCACTCCTTCTGAGCCTGGTTCTGTTCCGGAACCATCTCCAACAACACAAAAGAAAAAGTTGTTGGATCTTTTTCGTGAAAGTGTCAGAGAAAACCAAAGTGATGCTGAGAACACTTCTGAAATTGAAAAGAAAGAAGTGAAACCAACAACTGTACATGATCCTAAATCTGCACACAGTACTCCTTATGTCTCAGGAGGAAACTCTGCATGTAGCAGTGAAAGAACAATGAATGATGATCATGCCCCCATTAGAGAGAAACCTGTTAAATCTGTGCAGTGCTGCCTTCCAAGCTTGGCTTCGTGTCGTAGCTTCAGCGAGAGGAAGAGGAAGACAAGTCCTGCAATAACAGATAATGGAAAAGCATGA

Predicted protein sequences of Glyma19g25332

Limit To All Plant Sequences

>Glyma19g25332.1   sequence type=predicted peptide   gene model=Glyma19g25332   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHSWYGIFFCDATPFPLKANHLLLSPIFSSSPFHWAFYFSFLTNAFFFFSFPAFAITPKQNSFILFSSSLPTPTLLILRPSSLSLTSTPLFSLSHTHHELFLLYAASWCFFLLNSEMGLCSSVHRNEQTNMKHLTLSFESKTESLVIPPSPFKDKDKAINGNFVVADDDAAFKAQQWSPSRSTTTFSVTDCGDNDGKEESFFDSKAWLDSDCDDDFYSVKGEFTPSRGSTPVHHIFLNKTTPSEPGSVPEPSPTTQKKKLLDLFRESVRENQSDAENTSEIEKKEVKPTTVHDPKSAHSTPYVSGGNSACSSERTMNDDHAPIREKPVKSVQCCLPSLASCRSFSERKRKTSPAITDNGKA*

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