Report for Sequence Feature Glyma19g25260
Feature Type: gene_model
Chromosome: Gm19
Start: 31285292
stop: 31288072
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g25260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G01840 AT
Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr3:296582-298634 REVERSE LENGTH=654
SoyBase E_val: 1.00E-147 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF149 Panther
PROTEIN KINASE FAMILY PROTEIN
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
PF01476 PFAM
LysM domain
JGI ISS
UniRef100_A5YJW1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LYK10 n=2 Tax=Glycine max RepID=A5YJW1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_A5YJW1 UniRef
Annotation by Michelle Graham. Best UniRef hit: LYK10 n=2 Tax=Glycine max RepID=A5YJW1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g25260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g25260
Paralog Evidence Comments
Glyma16g06380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g25260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g088300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g25260
Coding sequences of Glyma19g25260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g25260.1 sequence type=CDS gene model=Glyma19g25260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGCACAGTAGAAATGATCATTGCATTTCACATGAAGGCTTTGGTCTTTTTCCTTTGGCTGTTTGTCCCCTCATTGGGCAAAGACTTGCTAAGCTGTGAGACAACTTCACCTGATGCCTCTGGCTACCATTGCATTGAAAATGTGTCACAGAACCAATGTGAGACATTTGCACTCTTTTTAACAAACTCTTACTACTCCTCTCTCTCCAACCTCACCTCTTATTTGGGACTAAACAAGTTTGTCATAGCACAAGCAAATGGTTTCTCTGCAGACACTGAGTTCCTCTCCCAGGATCAGCCTCTACTGGTACCTATTCATTGTAAATGCATAGGTGGCTTCTCTCAGGCTGAGTTAACCAAAACTACCGTCAAAGGAGAGAGCTTCTATGGCATTGCTCAATCACTAGAGGGATTGACAACTTGCAAGGCTATTAGGGACAACAACCCTGGTGTGTCACCTTGGAATCTTGATGACAAAGTGAGATTGGTTGTTCCATTGAGATGTTCCTGCCCATTTTCATCTCAAGTTAGACCACAACCAAAGCTTCTGCTTTCTTATCCAGTAAGTGAAGGTGATACTATTTCCAATTTGGCCTCAAAGTTCAATATTACTAAAGAAGCTATTGTTTATGCTAATAACATATCATCACAAGGCCTTAGGACTAGAAGTAGTCTTGCACCCTTTACCTCTATTCTCATTCCACTTAATGGTAAGCCTATCATTGGTCCTTTGGTTAAGCCCAAGGAACCCGATTCTGGCAATCAAACAACCAGCATCCCAGTGACAAGTCCACACAAGAAATCACCAATGTGGAAGACTGAATTGTGCATTGGCCTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTTGCTGCCGCCTTTTTCTTCATCAGATTGAAACACAAGAAGGAGGAAGAGAATTCATGCAAAGAAGGGGACTTGGAGCTGCAATATCTGAACCAAAGTGTGAGAACCACCTCAACTAGTGACAAGAAAGTTTCATTTGAAGGGTCTCAGGATGCTCTTGATGTGAAAATCGTGGACGCCCTGCCGCGGAAGTTGTTGCTGGATACATACACCATTGAAGATGTGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGGTCAGTGTATCACGGTCGTCTGAACGGGAAGAACATGGCAATCAAAGGGACAAAGGCAGAAGTAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCATCATCCCAACATACTCAGGCTTCTTGGAACTAGCATGTTAGAGGGGGAGCAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACTTGGAGCCAAAGGCTCAGGATCTGCCTTGATGTGGCCGGTGCCTTGCAGTATATGCACCATGTTATGAATCCAAGCTATGTGCATAGAAATGTAAAGAGCAGGAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCAGGTTGTGTTGAGAATGACACTGAGGACCCTCAATTCTATTCCACCAACCCTGCCTCTTGGAGTCTTGGTTATTTGGCACCTGAATATGTGCACCAAGGTGTAATTTCCCCAAGTGTTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCCGGTCAAACACCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATTTGGCTTACAGATAAAATCAGGTCCATTTTGGTGTCAGAAAATGTGAATGAACTAAGGGATTGGATAGACAGTGCATTGGGGGAGAACTATTCATTTGATGCAGCTGTGACACTTGCCAACATTGCAAGAGCTTGTGTGGAGGAAGATTCCTCTTTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAGGAATTACCACAAGGGGAAAATGACATGTTAATGTGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAATGTTGAATAA
Predicted protein sequences of Glyma19g25260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g25260.1 sequence type=predicted peptide gene model=Glyma19g25260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTVEMIIAFHMKALVFFLWLFVPSLGKDLLSCETTSPDASGYHCIENVSQNQCETFALFLTNSYYSSLSNLTSYLGLNKFVIAQANGFSADTEFLSQDQPLLVPIHCKCIGGFSQAELTKTTVKGESFYGIAQSLEGLTTCKAIRDNNPGVSPWNLDDKVRLVVPLRCSCPFSSQVRPQPKLLLSYPVSEGDTISNLASKFNITKEAIVYANNISSQGLRTRSSLAPFTSILIPLNGKPIIGPLVKPKEPDSGNQTTSIPVTSPHKKSPMWKTELCIGLAGVALGVCIAFAAAFFFIRLKHKKEEENSCKEGDLELQYLNQSVRTTSTSDKKVSFEGSQDALDVKIVDALPRKLLLDTYTIEDVRKATEDFSSSNHIEGSVYHGRLNGKNMAIKGTKAEVVSKIDLGLFHDALHHHPNILRLLGTSMLEGEQQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVAGALQYMHHVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPQFYSTNPASWSLGYLAPEYVHQGVISPSVDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIRSILVSENVNELRDWIDSALGENYSFDAAVTLANIARACVEEDSSLRPSAREIVEKLSRLVEELPQGENDMLMCESSSKPLVKAVENNVE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
