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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14220 | AT | Annotation by Michelle Graham. TAIR10: Flavin containing amine oxidoreductase family | chr5:4583506-4587369 REVERSE LENGTH=508 | SoyBase | E_val: 0 | ISS |
| GO:0006779 | GO-bp | Annotation by Michelle Graham. GO Biological Process: porphyrin-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009851 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin biosynthetic process | SoyBase | N/A | ISS |
| GO:0010229 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inflorescence development | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0004729 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1276 | KOG | Protoporphyrinogen oxidase | JGI | ISS | |
| PTHR10742 | Panther | AMINE OXIDASE | JGI | ISS | |
| PTHR10742:SF52 | Panther | HEMG2/MEE61 (MATERNAL EFFECT EMBRYO ARREST 61), OX | JGI | ISS | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | ISS | |
| UniRef100_Q9SLW5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protoporphyrinogen IX oxidase n=1 Tax=Glycine max RepID=Q9SLW5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SLW5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Protoporphyrinogen IX oxidase n=1 Tax=Glycine max RepID=Q9SLW5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g25100 not represented in the dataset |
Glyma19g25100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g087600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g25100.2 sequence type=transcript gene model=Glyma19g25100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTCTCAGTTCTCGCTATCCCGCACCCCCCAACCCCCGCGTATGGCTTCCTCTGCAACAGACGATAACCCAAGATCTGTAAAAAGAGTAGCTGTTGTTGGTGCTGGGGTAAGTGGGCTTGCTGCGGCTTACAAATTGAAATCACATGGTCTGGATGTCACTGTATTTGAAGCTGAGGGAAGAGCTGGAGGGAGGTTGAGAAGTGTTTCTCAGGATGGTCTAATTTGGGATGAGGGAGCTAATACAATGACTGAAAGTGAAATTGAGGTTAAAGGTTTGATTGATGCTCTTGGACTTCAAGAAAAGCAGCAGTTTCCAATATCACAGCATAAGCGCTATATTGTGAAAAATGGGGCACCACTTCTGGTACCCACAAATCCTGCTGCACTACTGAAGAGTAAACTGCTTTCTGCACAATCAAAGATCCATCTCATTTTTGAACCATTTATGTGGAAAAGAAGTGACCCCTCTAATGTGTGTGATGAAAATTCTGTGGAAAGTGTAGGCAGGTTCTTTGAACGTCATTTTGGAAAAGAGGTTGTGGACTATCTGATTGATCCTTTTGTTGGGGGCACTAGTGCAGCAGATCCTGAATCTCTCTCTATGCGCCATTCTTTCCCAGAGCTATGGAATTTGGAGAAAAGGTTTGGCTCCATTATAGCCGGGGCATTGCAATCTAAGTTATTCGCCAAAAGGGAAAAAACTGGAGAAAATAGGACTGCACTAAGAAAAAACAAACACAAGCGTGGTTCGTTTTCTTTCCAGGGTGGGATGCAGACACTGACAGATACATTGTGCAAAGAGCTTGGCAAAGACGACCTTAAATTAAATGAAAAGGTTTTGACATTAGCTTATGGTCATGATGGAAGTTCCTCTTCACAAAACTGGTCTATTACTAGTGCTTCTAACCAAAGTACACAAGATGTTGATGCAGTAATCATGACGGCTCCTCTATATAATGTCAAGGACATCAAGATCACAAAAAGGGGAACTCCCTTTCCACTTAATTTTCTTCCCGAGGTAAGCTACGTGCCAATCTCAGTCATGATTACTACCTTCAAAAAGGAGAATGTAAAGAGACCTTTGGAGGGATTTGGAGTTCTTGTTCCTTCTAAAGAGCAAAAAAATGGTTTAAAAACCCTTGGTACACTTTTTTCCTCTATGATGTTCCCAGATCGTGCACCTAGTGATTTATATCTCTATACCACCTTCATTGGCGGAACTCAAAACAGGGAACTTGCTCAAGCTTCAACGTACTTTTACTGTAGTTCTAATTATATATTTTGCAGAACCAGAACCAAATGAGAACATGTTGACACACTAATATCTTTTTTCGTTTCTATTCAACTAAAATTTATTTATAATTCCTACTCAATAAATTATATATAATCTCCTGCTGACTCGTCTTTTTCTTTGGAATAATGATATACTGTCAAAAACCATATATAATCTCCTGCTGACACATCTTTTTCTTTTCTTTTCTTTATATCATTTTCCTTATTAGTTTCTTTGTTTACTGCAGTGACGAGCTTAGGAAAATTGTTACTTCTGACCTGAGAAAGTTGTTGGGAGCAGAGGGGGAACCAACATTTGTTAACCATTTCTATTGGAGTAAAGGCTTTCCTTTGTATGGACGTAACTATGGGTCAGTTCTTCAAGCAATTGATAAGATAGAAAAAGATCTTCCCGGATTTTTCTTTGCAGGTAACTACAAAGGTGGACTCTCAGTTGGCAAAGCAATAGCCTCAGGCTGCAAAGCAGCTGATCTTGTGATATCCTACCTCAACTCTGCTTCAGACAACACAGTGCCTGATAAATGATATCATCCTAGATGTAGGAATTAGGAAGGGTATGCTTTCTATTTACCAAAAGTGTTGAATTAACCCCTTATTTCAGCATCCGTAAACAATGTAATAATTATTATGCTTGCACAGTGCAACAGTCCCCCATTTTGAATTGGGAGAAGGAAGTTCATTAAAAATTTAAAATGCAGACATTGTAGCAGAACTAATCTTTCTTCTGACACAATTATACAAACTGAGCCTCCTGATGATCATGGATATAGTCTTTTGATCCAAGATGTAGTTAAAGTTGCTTTTCTTTCTTGTTTTTAAAGGCAAAATGAGTAGTTAAAGTTGCTGTTTACTTATGTTTAGTCGGTTATCTTCTGAATATTTGATATTATCCTCTTCCAATTGACAAGATGAAAATATGTTTTAGGTCTTTGAT
>Glyma19g25100.1 sequence type=CDS gene model=Glyma19g25100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCTCTGCAACAGACGATAACCCAAGATCTGTAAAAAGAGTAGCTGTTGTTGGTGCTGGGGTAAGTGGGCTTGCTGCGGCTTACAAATTGAAATCACATGGTCTGGATGTCACTGTATTTGAAGCTGAGGGAAGAGCTGGAGGGAGGTTGAGAAGTGTTTCTCAGGATGGTCTAATTTGGGATGAGGGAGCTAATACAATGACTGAAAGTGAAATTGAGGTTAAAGGTTTGATTGATGCTCTTGGACTTCAAGAAAAGCAGCAGTTTCCAATATCACAGCATAAGCGCTATATTGTGAAAAATGGGGCACCACTTCTGGTACCCACAAATCCTGCTGCACTACTGAAGAGTAAACTGCTTTCTGCACAATCAAAGATCCATCTCATTTTTGAACCATTTATGTGGAAAAGAAGTGACCCCTCTAATGTGTGTGATGAAAATTCTGTGGAAAGTGTAGGCAGGTTCTTTGAACGTCATTTTGGAAAAGAGGTTGTGGACTATCTGATTGATCCTTTTGTTGGGGGCACTAGTGCAGCAGATCCTGAATCTCTCTCTATGCGCCATTCTTTCCCAGAGCTATGGAATTTGGAGAAAAGGTTTGGCTCCATTATAGCCGGGGCATTGCAATCTAAGTTATTCGCCAAAAGGGAAAAAACTGGAGAAAATAGGACTGCACTAAGAAAAAACAAACACAAGCGTGGTTCGTTTTCTTTCCAGGGTGGGATGCAGACACTGACAGATACATTGTGCAAAGAGCTTGGCAAAGACGACCTTAAATTAAATGAAAAGGTTTTGACATTAGCTTATGGTCATGATGGAAGTTCCTCTTCACAAAACTGGTCTATTACTAGTGCTTCTAACCAAAGTACACAAGATGTTGATGCAGTAATCATGACGGCTCCTCTATATAATGTCAAGGACATCAAGATCACAAAAAGGGGAACTCCCTTTCCACTTAATTTTCTTCCCGAGGTAAGCTACGTGCCAATCTCAGTCATGATTACTACCTTCAAAAAGGAGAATGTAAAGAGACCTTTGGAGGGATTTGGAGTTCTTGTTCCTTCTAAAGAGCAAAAAAATGGTTTAAAAACCCTTGGTACACTTTTTTCCTCTATGATGTTCCCAGATCGTGCACCTAGTGATTTATATCTCTATACCACCTTCATTGGCGGAACTCAAAACAGGGAACTTGCTCAAGCTTCAACTGACGAGCTTAGGAAAATTGTTACTTCTGACCTGAGAAAGTTGTTGGGAGCAGAGGGGGAACCAACATTTGTTAACCATTTCTATTGGAGTAAAGGCTTTCCTTTGTATGGACGTAACTATGGGTCAGTTCTTCAAGCAATTGATAAGATAGAAAAAGATCTTCCCGGATTTTTCTTTGCAGGTAACTACAAAGGTGGACTCTCAGTTGGCAAAGCAATAGCCTCAGGCTGCAAAGCAGCTGATCTTGTGATATCCTACCTCAACTCTGCTTCAGACAACACAGTGCCTGATAAATGA >Glyma19g25100.2 sequence type=CDS gene model=Glyma19g25100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCTCTGCAACAGACGATAACCCAAGATCTGTAAAAAGAGTAGCTGTTGTTGGTGCTGGGGTAAGTGGGCTTGCTGCGGCTTACAAATTGAAATCACATGGTCTGGATGTCACTGTATTTGAAGCTGAGGGAAGAGCTGGAGGGAGGTTGAGAAGTGTTTCTCAGGATGGTCTAATTTGGGATGAGGGAGCTAATACAATGACTGAAAGTGAAATTGAGGTTAAAGGTTTGATTGATGCTCTTGGACTTCAAGAAAAGCAGCAGTTTCCAATATCACAGCATAAGCGCTATATTGTGAAAAATGGGGCACCACTTCTGGTACCCACAAATCCTGCTGCACTACTGAAGAGTAAACTGCTTTCTGCACAATCAAAGATCCATCTCATTTTTGAACCATTTATGTGGAAAAGAAGTGACCCCTCTAATGTGTGTGATGAAAATTCTGTGGAAAGTGTAGGCAGGTTCTTTGAACGTCATTTTGGAAAAGAGGTTGTGGACTATCTGATTGATCCTTTTGTTGGGGGCACTAGTGCAGCAGATCCTGAATCTCTCTCTATGCGCCATTCTTTCCCAGAGCTATGGAATTTGGAGAAAAGGTTTGGCTCCATTATAGCCGGGGCATTGCAATCTAAGTTATTCGCCAAAAGGGAAAAAACTGGAGAAAATAGGACTGCACTAAGAAAAAACAAACACAAGCGTGGTTCGTTTTCTTTCCAGGGTGGGATGCAGACACTGACAGATACATTGTGCAAAGAGCTTGGCAAAGACGACCTTAAATTAAATGAAAAGGTTTTGACATTAGCTTATGGTCATGATGGAAGTTCCTCTTCACAAAACTGGTCTATTACTAGTGCTTCTAACCAAAGTACACAAGATGTTGATGCAGTAATCATGACGGCTCCTCTATATAATGTCAAGGACATCAAGATCACAAAAAGGGGAACTCCCTTTCCACTTAATTTTCTTCCCGAGGTAAGCTACGTGCCAATCTCAGTCATGATTACTACCTTCAAAAAGGAGAATGTAAAGAGACCTTTGGAGGGATTTGGAGTTCTTGTTCCTTCTAAAGAGCAAAAAAATGGTTTAAAAACCCTTGGTACACTTTTTTCCTCTATGATGTTCCCAGATCGTGCACCTAGTGATTTATATCTCTATACCACCTTCATTGGCGGAACTCAAAACAGGGAACTTGCTCAAGCTTCAACGTACTTTTACTGTAGTTCTAATTATATATTTTGCAGAACCAGAACCAAATGA
>Glyma19g25100.1 sequence type=predicted peptide gene model=Glyma19g25100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSATDDNPRSVKRVAVVGAGVSGLAAAYKLKSHGLDVTVFEAEGRAGGRLRSVSQDGLIWDEGANTMTESEIEVKGLIDALGLQEKQQFPISQHKRYIVKNGAPLLVPTNPAALLKSKLLSAQSKIHLIFEPFMWKRSDPSNVCDENSVESVGRFFERHFGKEVVDYLIDPFVGGTSAADPESLSMRHSFPELWNLEKRFGSIIAGALQSKLFAKREKTGENRTALRKNKHKRGSFSFQGGMQTLTDTLCKELGKDDLKLNEKVLTLAYGHDGSSSSQNWSITSASNQSTQDVDAVIMTAPLYNVKDIKITKRGTPFPLNFLPEVSYVPISVMITTFKKENVKRPLEGFGVLVPSKEQKNGLKTLGTLFSSMMFPDRAPSDLYLYTTFIGGTQNRELAQASTDELRKIVTSDLRKLLGAEGEPTFVNHFYWSKGFPLYGRNYGSVLQAIDKIEKDLPGFFFAGNYKGGLSVGKAIASGCKAADLVISYLNSASDNTVPDK* >Glyma19g25100.2 sequence type=predicted peptide gene model=Glyma19g25100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSATDDNPRSVKRVAVVGAGVSGLAAAYKLKSHGLDVTVFEAEGRAGGRLRSVSQDGLIWDEGANTMTESEIEVKGLIDALGLQEKQQFPISQHKRYIVKNGAPLLVPTNPAALLKSKLLSAQSKIHLIFEPFMWKRSDPSNVCDENSVESVGRFFERHFGKEVVDYLIDPFVGGTSAADPESLSMRHSFPELWNLEKRFGSIIAGALQSKLFAKREKTGENRTALRKNKHKRGSFSFQGGMQTLTDTLCKELGKDDLKLNEKVLTLAYGHDGSSSSQNWSITSASNQSTQDVDAVIMTAPLYNVKDIKITKRGTPFPLNFLPEVSYVPISVMITTFKKENVKRPLEGFGVLVPSKEQKNGLKTLGTLFSSMMFPDRAPSDLYLYTTFIGGTQNRELAQASTYFYCSSNYIFCRTRTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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