Glyma19g24620 - SoyBase

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Report for Sequence Feature Glyma19g24620

Feature Type:	gene_model
Chromosome:	Gm19
Start:	30267018
stop:	30272010
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g24620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40810	AT	Annotation by Michelle Graham. TAIR10: Cytochrome C1 family \| chr5:16340200-16342327 FORWARD LENGTH=307	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005746	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain	SoyBase	N/A	ISS
GO:0005750	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
GO:0045153	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	SoyBase	N/A	ISS
KOG3052	KOG	Cytochrome c1	JGI		ISS
PTHR10266	Panther	CYTOCHROME C1	JGI		ISS
PF02167	PFAM	Cytochrome C1 family	JGI		ISS
UniRef100_C6TIQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TIQ7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7KN99	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c1 heme protein n=1 Tax=Medicago truncatula RepID=G7KN99_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g24620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g24620 not represented in the dataset	Glyma19g24620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g24620

Paralog	Evidence	Comments
Glyma16g06700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g24620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g084900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g24620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g24620

Limit To All Plant Sequences

>Glyma19g24620.4   sequence type=transcript   gene model=Glyma19g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATAATAAACTTGAAAATCCCAAAATGTGTTCCAAAACCCCAACACCTAGCACCCACTCCGTAGAAACCAAACTCCCACACCAAAATCCAGCACCACAATAGACTAGAAGCCAAACTCTCACTTACCTTGGTCACCGTCACACTTAGAGGGTGATAAGGGAAGTGTGTCATGTGACTGAGGGAAGCAGCGAAATCGCGTGTGGGATTGCCGACTCAGGGAAGACATTTGGGGGAAGAGACTGCTGAGACTTATTAAGGGTAATTTTGTTCACACAATGAAAATGGGAAGTGCAGGAAGCAAGTAGTGAAGTGCAGAAAGTAAATGTCCTTCGAAAATGACGGGCATGGACTTGAAACCAGCGGTAGGCTCGAGGCCCATAATGAAAAGCCCAAAAGCTAAGAGCAATTGTGGTGACGAGATCGGAACGTGTGGTGGAAACATGCGAATGGCTGCTACTACTGCTCCTTGGTTTTTTTGTTCATTTTGTTGTATTGTTGTCTTCAACTGAATCTGCCACACCACAATACACCACACAGTTCCCTCACTTCTCTCCTTTTGACCATTCAACCTTCGCCTTTGCCTCCTTTCCGTGACTGAGATGGCTGGAGGTGTTATTCAGCAGATATTGAGGAGGAAACTACACCCTCGGTTTACTAACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCTTCTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTATCAGGCCTTTTCAGTTTTTCAACAATGGCAGCAGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCGTGGCCTCACAAAGGAATTCTTAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCGTATCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAACGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGCGATCGTTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCAGATCTAAGTCTTATTACCAAAGCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCTGGTGTTTCAATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAGGATGTTGTGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCTATTACCGCCGCTTGAGGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAGCTCTGCCTCAAGTTTCATTTTCACTTGAACAAAGATTACTGTTGGCAATAATCTGTCAGACGATTAAGATGTTTCATCATTTCAAATTCGTTCAGCAAAGTTGATGGTTAATGGAACAACAACCGGGAGAGTGTTATAATTTTTGTTTGAGATAAAAAAAATGTTCCATGCACGTGATGCGTTTGCTTTTTCTCATCATCCATCTCGGACCTCTGTATTGTTGGGAGGTGTTCCTCTGTTTGATAAACTATTGAATTTTGTGGAACTTGCCTATCATTATGTTGGTCGTTATTCAAGAAAAAAGAATAGATAATATGCCCACGTGGACATTGGAAGATGGATTTTTTCTCTTCAGCTTTAGCGGTATTCTGTT

Coding sequences of Glyma19g24620

Limit To All Plant Sequences

>Glyma19g24620.3   sequence type=CDS   gene model=Glyma19g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAGGTGTTATTCAGCAGATATTGAGGAGGAAACTACACCCTCGGTTTACTAACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCTTCTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTATCAGGCCTTTTCAGTTTTTCAACAATGGCAGCAGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCGTGGCCTCACAAAGGAATTCTTAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCGTATCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAACGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGCGATCGTTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCAGATCTAAGTCTTATTACCAAAGCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCTGGTGTTTCAATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAGGATGTTGTGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCTATTACCGCCGCTTGAGGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG

>Glyma19g24620.4   sequence type=CDS   gene model=Glyma19g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAGGTGTTATTCAGCAGATATTGAGGAGGAAACTACACCCTCGGTTTACTAACTCTCCCTTGTTGTCACCCATCGTAGCCAAGAAAGATGATGCTGGCTCTTCTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTATCAGGCCTTTTCAGTTTTTCAACAATGGCAGCAGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCGTGGCCTCACAAAGGAATTCTTAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCGTATCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAACGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGCGATCGTTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCAGATCTAAGTCTTATTACCAAAGCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCTGGTGTTTCAATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAGGATGTTGTGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCTATTACCGCCGCTTGAGGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG

Predicted protein sequences of Glyma19g24620

Limit To All Plant Sequences

>Glyma19g24620.3   sequence type=predicted peptide   gene model=Glyma19g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGVIQQILRRKLHPRFTNSPLLSPIVAKKDDAGSSGSQSLRALALIGAGLSGLFSFSTMAAADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYTEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*

>Glyma19g24620.4   sequence type=predicted peptide   gene model=Glyma19g24620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGVIQQILRRKLHPRFTNSPLLSPIVAKKDDAGSSGSQSLRALALIGAGLSGLFSFSTMAAADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYTEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*

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