SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G27260 | AT | Annotation by Michelle Graham. TAIR10: global transcription factor group E8 | chr3:10068411-10072403 FORWARD LENGTH=813 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| KOG1474 | KOG | Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins | JGI | ISS | |
| PTHR22880 | Panther | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS | JGI | ISS | |
| PTHR22880:SF31 | Panther | BROMODOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PF00439 | PFAM | Bromodomain | JGI | ISS | |
| UniRef100_B9RBN1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RBN1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233ED54 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ED54 related cluster n=1 Tax=unknown RepID=UPI000233ED54 | SoyBase | E_val: 0 | ISS |
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Glyma19g24590 not represented in the dataset |
Glyma19g24590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g06710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g084600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g24590.3 sequence type=transcript gene model=Glyma19g24590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTATTGTTTTATTATATTATAGGAGACGAGAGCTGAGCTCAGAGCAAAAAAAAAAAAAACTGCTCTTCGCTTCCGTCTCGTTCGGTTCAACCACAAACCTTCCTCTGAATCACTTCTCTTACTCTGCAACAACGTCGTTTTCCTTCTTCTTCTTCGTCTTCTTCTTCTTTGCTCACCCGGCTCAGTTCGCGCTCTCAGTAAAACGCGCTCAAGTGTCGCCGTTTTCTGCAAATTCAGCTAGGGTTTCACTCTCGCCGCGATCTCTCATCCTAGCTCGCCGAGTTCGGGTTCTAATCGCCGCGTCTAAGTTCACTGTTTCTCTGAATCGAAGAAAGGACTTCGAATTTCGCTGCTTTCAGTTAGTAGCTGGTAATTGATTTGGGTCTTTGGTTCCATTTCAAGTTAACCTGTGTGGTGGAAGCTGTGTAAATAATTACCTACACCAGTTATATATCAGTGTTTTTCTTGTTAGAGTTAATAAAAAAGGGGATTTGAATTTCTCCTACTTGTTGAGTTTGTTCGCTTCTTTAATATTCGGTGATTTGTCTTCCCCTTTTGTACTAGGGTTCCAAGTTGCAAAGATTTCGGTATTAGATTTTTTAGTTTGTTTCATTAATTAAATTACTGTGTAACTTTCAACAGTAATCCTGAACTTCACCTGGCCGTTAGGTTTGGTTAAGGAACTGCGGTTTTTGGTTAATTGAATAAATGAGCATGATGATGGCAAAGAGTAGGCTGTCTGGGGGCTATTTTGGAAATGCACTAGATACTGCTGGTGAATCTGAGGGTTCTGGTAGCTCGGGAAGAATAGATACTGAAATTACGGTTTCGGAGGATTCGAGTATCCCCGCGAGGAAATGTATTAGTTTGAATTCGAGTCGCCACGATGTGTTTGGTGCTCCCGTGCAAGTTGTTCCCTTGTCGAATATGCCACTCTCTCATAGAAAAGATCTGGGGCAAAGGTTGAGGTCCGAGCTTGAGCAGATTCGGCTGCTTCAGAAGAAAATTGAACAGCAGAGGACGACTGCTGTTGTGTTGTCCTCCTCCAGTGATATTCTTAGCTGTAGTAATGGGAATAATGGGCATCGAGTGGAAAGGGATAAAAAGCCGGCGATGTCCAGTTCTGCACCAAGGAATAAAGCGAAGCCGGGTAATAAGAATCAGAAGCCTCGTGGATGGAACCGGGGTTCTTCTGGGAAGTTTGAGTCTGCGGTCCAGTCTGCTTCACCATCCACTGCGAATGCTATGTTGATGAAAGATTGTGAGTTGCTGTTGAAACGGTTGATGAATCACCAGTATGCTTGGGTTTTCAACACCCCTGTGGATGTGGTGAAGTTGAATCTTCCAGATTATTTCACTATTATTAAGCGTCCCATGGATTTGGGAACAGTAAAAAACAAGTTGGCTTCTGGAGAATATGCTGGCCCACTGGAATTTGCTGATGATGTGAAGCTTACATTTTCAAACGCAATGGACTACAATCCATCTGGGAATGATGTCCATCTCATGGCTGATACCCTCAATAAATATTTTGAGTTGAGATGGAAAGCAATTGAGAAGAAATTGCAAAAAAGTGATTTTCTGCCATTACCTGCAAACCCTGACAATAGTGAAGGTGTAAAAACTAAAAGACAAGCACCTCTTTCAAAAAAGAGGAAAATTGCCTCATTACCCCCTCAACCTGAAGTTATGCCACCTACAAAGAAGGTTATGTCGGATCAAGAGAAGCATGATCTAGGTCGAGAATTGGAATCTCAGCTGGGAGAAATGCCTATGCATATAATTGATTTCTTAAAAGAACATAGTTCAAATGGTAGAGAATGTGGTGATGACGAGATTGAGATTGATATTGATGATCTCAGTGATGATACCCTATTCACATTACGCAAGCTTTTGGACGACTTTTTGCAAAAAAAGCAAAAGAACAAAGCAAAAGTTGAAGCGTGTGAAGTAGAGGTGTTGAATGATTCTGGACCAAGCAATTCCTCATTGCAACCATTTAAAGGTAATGATCCAGCGGATGAAGAGGTGGACATTGGTGGAAATGAGCCCCCTGTGTCAAGCTATCCTCATGTGGAGATTGAAAAGGATACAACTTATGGAATGAACAAAAGCCTAAGCCCAGGCAGCTCAAATGATACGGACTCTGATAGTTCTTCTGATAGTGAAGCTGATGATGTTAAAGCAAGACCAGCAAATGCAGCAAAGGCACCAGAAAATCTGGGTTCTGAAGCTCAGTTGGATGAAATGACCATGGCTGCTGCTAGTCTTGAAAGAAATCAATCTGTTAGTGGCTTAGATCAACTTGATGATAACTCTCAGCATAAGCCAAGTTCTTTTGATTCTGATTGCCAACAAGATGGGGACAGTGCTGCAACTGAGAGACAGTTCTCCCCTGATAAACTTTATCGAGCTGCTGTATTGAAGAAACGATTTCTTGATACCATCTTGAAAGCTCGAGAAAAGACACTGACACAGGGTGAAAAGGGGGATCCTGAGAAATTGCGCCAGGAAAGGGAGAAACTGGAGATGGAGCAAAAGAAAGAAAAGGCTAGGCTACAAGCAGAAGCAAAGGCAGCTGAAGATGCTCGAAAGCAGGCAGAGGAAGAAGCTGCTGCAGAAGCCAGACGAAAAAGGGAGCTTGAGAGAGAAGCTGCACGGCAAGCATTGCTCCAGATGGAAAAGACTGTTGAAATCAATGAGAATTCTCGAATTCTTGAAGATTTGGAACTGCTTAGAGCTGTACCCACTGAGCAATTGCCAAGTTCTGTAGATGAGACGAGTCCTGCACACTCTCAGGATGGTCTGGGTAGTTTCAAGTTTGGGAGTAGTAACCCCTTGGAACAACTAGGATTATATATCAAAGCCGATGATGAAGAGGAGGAAGGAGAGCCACCCTGTATTCCAAATCCTGTAAATGATGTAGAAGAGGGTGAAATTGATTAAAAGTTACGCACACATATTGTATGATAAATTGAGGATCGAAGTATACTTAATCTTGATCCCAAAAAAGTTCCACAAATTAATGCATTAACATCATAAGTGGGACGGAGCATATTTTCTTGTGGAAGCATTCAGTTTCTAGAAAGGTAATATATTCAGTTTTGGGCTGTGATGGCAATAGAGGAGCAGTTTGAGCAGAAAGTAAGCTATGTTTCGGGCTGTTTGCAATGAAAATAGAAGTAATACATCAACCTTGTTTTTATCAATACTGGCTGGTGGCTAGAGGCTAAAGCATCGCATCCCTTCGTAGTTCGTATGGATTATGTTGTACAAAAGATAGAATTTGTGAACATACACTGCTGTAGCTCCATCTTTGGATACTTCGCACTTGTATTTGTGTCTGGCTATTCCTTTATTAACTTATAATTTTGGTTAAAATTTTAAGGGATGTTTCATCTTCAGACATTGTAAACGTTTAGGTATACAGCGTAAGTTAAGGAAACAAGATATGATTGGCCCATCTTTTTTTCTGCTTATAAGCTGTTAGGCCCTCATTTAAACATGTTAACCATATAAAGGGGAGAGGACAAGTGGCAGAAAAGAAGAGGATTATGGAGGAAAAGGAGGGAGTAGGGAATGATCGAGGCATAATAGAAAGGGACAGGTGGTGGCA
>Glyma19g24590.2 sequence type=CDS gene model=Glyma19g24590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCATGATGATGGCAAAGAGTAGGCTGTCTGGGGGCTATTTTGGAAATGCACTAGATACTGCTGGTGAATCTGAGGGTTCTGGTAGCTCGGGAAGAATAGATACTGAAATTACGGTTTCGGAGGATTCGAGTATCCCCGCGAGGAAATGTATTAGTTTGAATTCGAGTCGCCACGATGTGTTTGGTGCTCCCGTGCAAGTTGTTCCCTTGTCGAATATGCCACTCTCTCATAGAAAAGATCTGGGGCAAAGGTTGAGGTCCGAGCTTGAGCAGATTCGGCTGCTTCAGAAGAAAATTGAACAGCAGAGGACGACTGCTGTTGTGTTGTCCTCCTCCAGTGATATTCTTAGCTGTAGTAATGGGAATAATGGGCATCGAGTGGAAAGGGATAAAAAGCCGGCGATGTCCAGTTCTGCACCAAGGAATAAAGCGAAGCCGGGTAATAAGAATCAGAAGCCTCGTGGATGGAACCGGGGTTCTTCTGGGAAGTTTGAGTCTGCGGTCCAGTCTGCTTCACCATCCACTGCGAATGCTATGTTGATGAAAGATTGTGAGTTGCTGTTGAAACGGTTGATGAATCACCAGTATGCTTGGGTTTTCAACACCCCTGTGGATGTGGTGAAGTTGAATCTTCCAGATTATTTCACTATTATTAAGCGTCCCATGGATTTGGGAACAGTAAAAAACAAGTTGGCTTCTGGAGAATATGCTGGCCCACTGGAATTTGCTGATGATGTGAAGCTTACATTTTCAAACGCAATGGACTACAATCCATCTGGGAATGATGTCCATCTCATGGCTGATACCCTCAATAAATATTTTGAGTTGAGATGGAAAGCAATTGAGAAGAAATTGCAAAAAAGTGATTTTCTGCCATTACCTGCAAACCCTGACAATAGTGAAGGTGTAAAAACTAAAAGACAAGCACCTCTTTCAAAAAAGAGGAAAATTGCCTCATTACCCCCTCAACCTGAAGTTATGCCACCTACAAAGAAGGTTATGTCGGATCAAGAGAAGCATGATCTAGGTCGAGAATTGGAATCTCAGCTGGGAGAAATGCCTATGCATATAATTGATTTCTTAAAAGAACATAGTTCAAATGGTAGAGAATGTGGTGATGACGAGATTGAGATTGATATTGATGATCTCAGTGATGATACCCTATTCACATTACGCAAGCTTTTGGACGACTTTTTGCAAAAAAAGCAAAAGAACAAAGCAAAAGTTGAAGCGTGTGAAGTAGAGGTGTTGAATGATTCTGGACCAAGCAATTCCTCATTGCAACCATTTAAAGGTAATGATCCAGCGGATGAAGAGGTGGACATTGGTGGAAATGAGCCCCCTGTGTCAAGCTATCCTCATGTGGAGATTGAAAAGGATACAACTTATGGAATGAACAAAAGCCTAAGCCCAGGCAGCTCAAATGATACGGACTCTGATAGTTCTTCTGATAGTGAAGCTGATGATGTTAAAGCAAGACCAGCAAATGCAGCAAAGGCACCAGAAAATCTGGGTTCTGAAGCTCAGTTGGATGAAATGACCATGGCTGCTGCTAGTCTTGAAAGAAATCAATCTGTTAGTGGCTTAGATCAACTTGATGATAACTCTCAGCATAAGCCAAGTTCTTTTGATTCTGATTGCCAACAAGATGGGGACAGTGCTGCAACTGAGAGACAGTTCTCCCCTGATAAACTTTATCGAGCTGCTGTATTGAAGAAACGATTTCTTGATACCATCTTGAAAGCTCGAGAAAAGACACTGACACAGGGTGAAAAGGGGGATCCTGAGAAATTGCGCCAGGAAAGGGAGAAACTGGAGATGGAGCAAAAGAAAGCAGAAAAGGCTAGGCTACAAGCAGAAGCAAAGGCAGCTGAAGATGCTCGAAAGCAGGCAGAGGAAGAAGCTGCTGCAGAAGCCAGACGAAAAAGGGAGCTTGAGAGAGAAGCTGCACGGCAAGCATTGCTCCAGATGGAAAAGACTGTTGAAATCAATGAGAATTCTCGAATTCTTGAAGATTTGGAACTGCTTAGAGCTGTACCCACTGAGCAATTGCCAAGTTCTGTAGATGAGACGAGTCCTGCACACTCTCAGGATGGTCTGGGTAGTTTCAAGTTTGGGAGTAGTAACCCCTTGGAACAACTAGGATTATATATCAAAGCCGATGATGAAGAGGAGGAAGGAGAGCCACCCTGTATTCCAAATCCTGTAAATGATGTAGAAGAGGGTGAAATTGATTAA >Glyma19g24590.3 sequence type=CDS gene model=Glyma19g24590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCATGATGATGGCAAAGAGTAGGCTGTCTGGGGGCTATTTTGGAAATGCACTAGATACTGCTGGTGAATCTGAGGGTTCTGGTAGCTCGGGAAGAATAGATACTGAAATTACGGTTTCGGAGGATTCGAGTATCCCCGCGAGGAAATGTATTAGTTTGAATTCGAGTCGCCACGATGTGTTTGGTGCTCCCGTGCAAGTTGTTCCCTTGTCGAATATGCCACTCTCTCATAGAAAAGATCTGGGGCAAAGGTTGAGGTCCGAGCTTGAGCAGATTCGGCTGCTTCAGAAGAAAATTGAACAGCAGAGGACGACTGCTGTTGTGTTGTCCTCCTCCAGTGATATTCTTAGCTGTAGTAATGGGAATAATGGGCATCGAGTGGAAAGGGATAAAAAGCCGGCGATGTCCAGTTCTGCACCAAGGAATAAAGCGAAGCCGGGTAATAAGAATCAGAAGCCTCGTGGATGGAACCGGGGTTCTTCTGGGAAGTTTGAGTCTGCGGTCCAGTCTGCTTCACCATCCACTGCGAATGCTATGTTGATGAAAGATTGTGAGTTGCTGTTGAAACGGTTGATGAATCACCAGTATGCTTGGGTTTTCAACACCCCTGTGGATGTGGTGAAGTTGAATCTTCCAGATTATTTCACTATTATTAAGCGTCCCATGGATTTGGGAACAGTAAAAAACAAGTTGGCTTCTGGAGAATATGCTGGCCCACTGGAATTTGCTGATGATGTGAAGCTTACATTTTCAAACGCAATGGACTACAATCCATCTGGGAATGATGTCCATCTCATGGCTGATACCCTCAATAAATATTTTGAGTTGAGATGGAAAGCAATTGAGAAGAAATTGCAAAAAAGTGATTTTCTGCCATTACCTGCAAACCCTGACAATAGTGAAGGTGTAAAAACTAAAAGACAAGCACCTCTTTCAAAAAAGAGGAAAATTGCCTCATTACCCCCTCAACCTGAAGTTATGCCACCTACAAAGAAGGTTATGTCGGATCAAGAGAAGCATGATCTAGGTCGAGAATTGGAATCTCAGCTGGGAGAAATGCCTATGCATATAATTGATTTCTTAAAAGAACATAGTTCAAATGGTAGAGAATGTGGTGATGACGAGATTGAGATTGATATTGATGATCTCAGTGATGATACCCTATTCACATTACGCAAGCTTTTGGACGACTTTTTGCAAAAAAAGCAAAAGAACAAAGCAAAAGTTGAAGCGTGTGAAGTAGAGGTGTTGAATGATTCTGGACCAAGCAATTCCTCATTGCAACCATTTAAAGGTAATGATCCAGCGGATGAAGAGGTGGACATTGGTGGAAATGAGCCCCCTGTGTCAAGCTATCCTCATGTGGAGATTGAAAAGGATACAACTTATGGAATGAACAAAAGCCTAAGCCCAGGCAGCTCAAATGATACGGACTCTGATAGTTCTTCTGATAGTGAAGCTGATGATGTTAAAGCAAGACCAGCAAATGCAGCAAAGGCACCAGAAAATCTGGGTTCTGAAGCTCAGTTGGATGAAATGACCATGGCTGCTGCTAGTCTTGAAAGAAATCAATCTGTTAGTGGCTTAGATCAACTTGATGATAACTCTCAGCATAAGCCAAGTTCTTTTGATTCTGATTGCCAACAAGATGGGGACAGTGCTGCAACTGAGAGACAGTTCTCCCCTGATAAACTTTATCGAGCTGCTGTATTGAAGAAACGATTTCTTGATACCATCTTGAAAGCTCGAGAAAAGACACTGACACAGGGTGAAAAGGGGGATCCTGAGAAATTGCGCCAGGAAAGGGAGAAACTGGAGATGGAGCAAAAGAAAGAAAAGGCTAGGCTACAAGCAGAAGCAAAGGCAGCTGAAGATGCTCGAAAGCAGGCAGAGGAAGAAGCTGCTGCAGAAGCCAGACGAAAAAGGGAGCTTGAGAGAGAAGCTGCACGGCAAGCATTGCTCCAGATGGAAAAGACTGTTGAAATCAATGAGAATTCTCGAATTCTTGAAGATTTGGAACTGCTTAGAGCTGTACCCACTGAGCAATTGCCAAGTTCTGTAGATGAGACGAGTCCTGCACACTCTCAGGATGGTCTGGGTAGTTTCAAGTTTGGGAGTAGTAACCCCTTGGAACAACTAGGATTATATATCAAAGCCGATGATGAAGAGGAGGAAGGAGAGCCACCCTGTATTCCAAATCCTGTAAATGATGTAGAAGAGGGTGAAATTGATTAA
>Glyma19g24590.2 sequence type=predicted peptide gene model=Glyma19g24590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMMMAKSRLSGGYFGNALDTAGESEGSGSSGRIDTEITVSEDSSIPARKCISLNSSRHDVFGAPVQVVPLSNMPLSHRKDLGQRLRSELEQIRLLQKKIEQQRTTAVVLSSSSDILSCSNGNNGHRVERDKKPAMSSSAPRNKAKPGNKNQKPRGWNRGSSGKFESAVQSASPSTANAMLMKDCELLLKRLMNHQYAWVFNTPVDVVKLNLPDYFTIIKRPMDLGTVKNKLASGEYAGPLEFADDVKLTFSNAMDYNPSGNDVHLMADTLNKYFELRWKAIEKKLQKSDFLPLPANPDNSEGVKTKRQAPLSKKRKIASLPPQPEVMPPTKKVMSDQEKHDLGRELESQLGEMPMHIIDFLKEHSSNGRECGDDEIEIDIDDLSDDTLFTLRKLLDDFLQKKQKNKAKVEACEVEVLNDSGPSNSSLQPFKGNDPADEEVDIGGNEPPVSSYPHVEIEKDTTYGMNKSLSPGSSNDTDSDSSSDSEADDVKARPANAAKAPENLGSEAQLDEMTMAAASLERNQSVSGLDQLDDNSQHKPSSFDSDCQQDGDSAATERQFSPDKLYRAAVLKKRFLDTILKAREKTLTQGEKGDPEKLRQEREKLEMEQKKAEKARLQAEAKAAEDARKQAEEEAAAEARRKRELEREAARQALLQMEKTVEINENSRILEDLELLRAVPTEQLPSSVDETSPAHSQDGLGSFKFGSSNPLEQLGLYIKADDEEEEGEPPCIPNPVNDVEEGEID* >Glyma19g24590.3 sequence type=predicted peptide gene model=Glyma19g24590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMMMAKSRLSGGYFGNALDTAGESEGSGSSGRIDTEITVSEDSSIPARKCISLNSSRHDVFGAPVQVVPLSNMPLSHRKDLGQRLRSELEQIRLLQKKIEQQRTTAVVLSSSSDILSCSNGNNGHRVERDKKPAMSSSAPRNKAKPGNKNQKPRGWNRGSSGKFESAVQSASPSTANAMLMKDCELLLKRLMNHQYAWVFNTPVDVVKLNLPDYFTIIKRPMDLGTVKNKLASGEYAGPLEFADDVKLTFSNAMDYNPSGNDVHLMADTLNKYFELRWKAIEKKLQKSDFLPLPANPDNSEGVKTKRQAPLSKKRKIASLPPQPEVMPPTKKVMSDQEKHDLGRELESQLGEMPMHIIDFLKEHSSNGRECGDDEIEIDIDDLSDDTLFTLRKLLDDFLQKKQKNKAKVEACEVEVLNDSGPSNSSLQPFKGNDPADEEVDIGGNEPPVSSYPHVEIEKDTTYGMNKSLSPGSSNDTDSDSSSDSEADDVKARPANAAKAPENLGSEAQLDEMTMAAASLERNQSVSGLDQLDDNSQHKPSSFDSDCQQDGDSAATERQFSPDKLYRAAVLKKRFLDTILKAREKTLTQGEKGDPEKLRQEREKLEMEQKKEKARLQAEAKAAEDARKQAEEEAAAEARRKRELEREAARQALLQMEKTVEINENSRILEDLELLRAVPTEQLPSSVDETSPAHSQDGLGSFKFGSSNPLEQLGLYIKADDEEEEGEPPCIPNPVNDVEEGEID*
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