Glyma19g24560 - SoyBase

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Report for Sequence Feature Glyma19g24560

Feature Type:	gene_model
Chromosome:	Gm19
Start:	30192838
stop:	30193599
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g24560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14280	AT	Annotation by Michelle Graham. TAIR10: DNA-binding storekeeper protein-related \| chr5:4609123-4611444 FORWARD LENGTH=572	SoyBase	E_val: 3.00E-99	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
PF03798	PFAM	TLC domain	JGI		ISS
UniRef100_G7L823	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase aldo/keto reductase family n=1 Tax=Medicago truncatula RepID=G7L823_MEDTR	SoyBase	E_val: 7.00E-104	ISS
UniRef100_I1N7L3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N7L3_SOYBN	SoyBase	E_val: 1.00E-171	ISS

Expression Patterns of Glyma19g24560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g24560

Paralog	Evidence	Comments
Glyma16g06730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g24560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g084400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g24560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g24560

Limit To All Plant Sequences

>Glyma19g24560.1   sequence type=CDS   gene model=Glyma19g24560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACAATAACAACCACCTCGTTAGCGTCATTAGAAAGCTGGGCCATCCTCCCATTCTTCATTATGTTCCTCTCCATATACTTGATCGGATACTTCCTTATTTTCCGCAAACAAACCCCCAAGATCCGACCCGAATTCTCCAGCTGCCTGATCTCGCTCTTTCACGGCACCCCCGCCGCAATCCTCGGCTTCGCCGCCCTCCTCTCCGATAGCCACCGCGGCTTCGCTGCCCCCAACACCGCCTTCCAGAAACTCGTCCTCGACTACAGCGCCGCCTACTTCCTCACAGATCTTCTTCACTACGTCTTTTTCTACCCTAGCGACGTGCTCTACATCGCGCACCACGTGGCGACCCTCTTCGTGGTCCTCACGTGCCGCCACGCGGTCTCGCATGGCGCGTTCGCAGTCCTCGTCCTCCTCGTCCTCGCCGAGGTCACCAGCGCGTGCCAGAACGCGTGGACCATCGCGGGGGCGCGGAAGGGTGAGGACGCGCGAGCCAGGCGCGTGCACGACGCCCTCTCGCCGCCGTTTTACGCGGCGTATTCGGTCGTGAGGGGGCTCGTTGGGCCCTACTTTGTGTACCGGATGGTTGTGTTCTACGCGAGTGGGGGCGCGCGTGGGCTTGTGCCCGTTTGGGCCTGGGCTTCGTGGGTCTTGGTTGTGGTTATGGCTATTGGGGTTAGTATCTTGTGGATTTGTAATCTTTGGGTTCAATTTTTTAGGGAAAGGAGGTTGAAATTGGAAGAGAAAATTAGATAG

Predicted protein sequences of Glyma19g24560

Limit To All Plant Sequences

>Glyma19g24560.1   sequence type=predicted peptide   gene model=Glyma19g24560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTITTTSLASLESWAILPFFIMFLSIYLIGYFLIFRKQTPKIRPEFSSCLISLFHGTPAAILGFAALLSDSHRGFAAPNTAFQKLVLDYSAAYFLTDLLHYVFFYPSDVLYIAHHVATLFVVLTCRHAVSHGAFAVLVLLVLAEVTSACQNAWTIAGARKGEDARARRVHDALSPPFYAAYSVVRGLVGPYFVYRMVVFYASGGARGLVPVWAWASWVLVVVMAIGVSILWICNLWVQFFRERRLKLEEKIR*

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