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Report for Sequence Feature Glyma19g24520

Feature Type:gene_model
Chromosome:Gm19
Start:30104855
stop:30113250
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g24520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40780AT Annotation by Michelle Graham. TAIR10: lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006820GO-bp Annotation by Michelle Graham. GO Biological Process: anion transport SoyBaseN/AISS
GO:0006862GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide transport SoyBaseN/AISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015696GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transport SoyBaseN/AISS
GO:0015802GO-bp Annotation by Michelle Graham. GO Biological Process: basic amino acid transport SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0043269GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ion transport SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015171GO-mf Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity SoyBaseN/AISS
KOG1303 KOG Amino acid transporters JGI ISS
PTHR22950Panther AMINO ACID TRANSPORTER JGI ISS
PF01490PFAM Transmembrane amino acid transporter protein JGI ISS
UniRef100_I1N7L1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N7L1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FKS8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lysine histidine transporter 1 n=1 Tax=Arabidopsis thaliana RepID=LHT1_ARATH SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g24520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g24520
ParalogEvidenceComments
Glyma16g06750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g24520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g083900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g24520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g24520
>Glyma19g24520.1   sequence type=CDS   gene model=Glyma19g24520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACTCAGTCTCAGACACCAGTCGATAACAATTATCTCAAAATCGCTACTGAAGAAGAATTACTGAGACAGAAGGCAATTAATGATTGGCTTCCAATTACTTCTTCAAGGAATGGAAAATGGTGGTACTCTGCCGTCCACAATGTCACTAGCATGGTTGGGGCTGGTGTCCTTAGTCTCCCATATGCCATGTCTGAGCTAGGATGGGGTCCCGGTGTAACTGTGCTAGTCCTGTCATGGATCATTACCTTGTACACCCTATGGCAAATGGTAGAGATGCATGAAATGGTTCCTGGAAAACGTTTTGATAGGTACCATGAACTTGGGCAGTATGCCTTTGGGGAGAAGCTAGGACTTTATATTGTGGTGCCTCAACAACTTGTGGTGGAAATTGGGGTCAACATTGTCTATATGGTCACTGGGGGAAAATCCTTGCAAAAGTTCCATGACACCGTGTGTGACAGCTGCAAAAAGATCAAGTTGACCTTCTTCATTATGATCTTTGCCTCTGTTCACTTTGTACTATCTCACCTGCCCAGCTTTAACTCCATTTCTGGTTTATCTCTGGCAGCAGCAGTTATGTCCTTGAGTTACTCTACAATTGCCTGGGCAGCTTCTGCCCATAAGGGTGTTCAAGAGAATGTACAATATGGTTACAAAGCTAAGAGTACATCAGGAACAGTCTTCAACTTCTTTAGTGCCCTTGGGGATGTTGCTTTTGCCTATGCTGGACACAATGTGGTGATGGAAATCCAAGCAACAATTCCATCTACACCGGAGAAACCATCCAAGGGTCCTATGTGGAGAGGAGTGGTTGTTGCTTACATAGTTGTGGGTTTATGCTACTTCCCAGTTGCCCTTATTGGTTACTGGATGTTTGGCAATTCTGTTGAAGATAACATTCTCATCAGTTTAGAGAAACCAAAATGGCTTATTGCAATGGCTAACATGTTTGTTGTGATCCATGTTATTGGTAGTTATCAGATTTATGCAATGCCAGTGTTTGACATGATTGAAACTGTGATGGTGAAGAAGTTGAACTTCAAACCTAGTAGTACACTTCGTTTCATTGTACGCAACGTGTATGTGGCATTCACAATGTTCGTTGGTATTACCTTCCCATTCTTTAGTGGTCTCCTAGGATTTTTTGGGGGATTTGCTTTTGCACCAACAACATACTTTCTCCCCTGCATCATGTGGCTTGCAATCTACAAACCAAGGAGATTCAGCTTGTCTTGGTGGGCCAACTGGATCTGCATTGTGTTTGGCATATTGTTGATGATTTTATCACCAATTGGAGGTTTGAGGTCAATCATAATTAGTGCCAAGGACTACAAGTTCTACTCATAA
Predicted protein sequences of Glyma19g24520
>Glyma19g24520.1   sequence type=predicted peptide   gene model=Glyma19g24520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTQSQTPVDNNYLKIATEEELLRQKAINDWLPITSSRNGKWWYSAVHNVTSMVGAGVLSLPYAMSELGWGPGVTVLVLSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQYAFGEKLGLYIVVPQQLVVEIGVNIVYMVTGGKSLQKFHDTVCDSCKKIKLTFFIMIFASVHFVLSHLPSFNSISGLSLAAAVMSLSYSTIAWAASAHKGVQENVQYGYKAKSTSGTVFNFFSALGDVAFAYAGHNVVMEIQATIPSTPEKPSKGPMWRGVVVAYIVVGLCYFPVALIGYWMFGNSVEDNILISLEKPKWLIAMANMFVVIHVIGSYQIYAMPVFDMIETVMVKKLNFKPSSTLRFIVRNVYVAFTMFVGITFPFFSGLLGFFGGFAFAPTTYFLPCIMWLAIYKPRRFSLSWWANWICIVFGILLMILSPIGGLRSIIISAKDYKFYS*






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