SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27370 | AT | Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr2:11708628-11709905 REVERSE LENGTH=221 | SoyBase | E_val: 1.00E-54 | ISS |
| GO:0007043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell junction assembly | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0048226 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Casparian strip | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| PTHR11615 | Panther | NITRATE, FROMATE, IRON DEHYDROGENASE | JGI | ISS | |
| PTHR11615:SF54 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04535 | PFAM | Domain of unknown function (DUF588) | JGI | ISS | |
| UniRef100_C6T4E0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Casparian strip membrane protein 5 n=1 Tax=Glycine max RepID=CASP5_SOYBN | SoyBase | E_val: 9.00E-74 | ISS |
| UniRef100_I1N7K9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7K9_SOYBN | SoyBase | E_val: 2.00E-144 | ISS |
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Glyma19g24400 not represented in the dataset |
Glyma19g24400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g083200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g24400.2 sequence type=transcript gene model=Glyma19g24400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTTTTGTATACTATATATATACATGCTTCGATCCTTCAAAGTTCAAATTATTGTTTTCCAATACTTGGAAGTTTAGACAAATACATCACAAGATGAAATCAGAGGTTAGTGCAGTTACAAGGGTGGTGGATAAAAATAAGGGCATTGACAAAGGGAAAGGTGTTACCTGGGCTGTTTCTGTTTCTGAAAAAGATTCATTTTCTTCCACAAAGGCTGCACCTTTTTCAAGATGGAAGAAGGGAATTGCGGTAACAGATTTCGTCCTACGACTTGGTGCCATCGGTGCAGCTATGGGTAGCGCTGTTACCATGGGAACCAACGAAGAACAACTACCATTCTTCACGCAGTTCCTCCAGTTCCATGCTCAGTGGAGTGATTTTCCCGTGTTCCAGTTTTTCGTGTTTGCAAACGGAGTAATCAGTGGATATGCTATCCTTAGCCTTCCCTTTTCATATGTGTGCATTGTTCAACCACATGCAGTAAGGCCAAGGCTTCTTCTTATGACCTTCGACACATTGGGGACTCAGGTGATGATGGGGCTAATCAGTGTTGCGGCGGCAGGTGCAGCTGCGATTGTGTACGTAGGTCATAATGGGAGTCAAGACGCGAATTGGATGGCTTTTTGCCAGGGATTCACCAACTTTTGTCAAGCTGCTAGTGAGGCTGTGGTCCTTTCATTTGTTGCAGCTGCTTTCTTCTTGTGTTTGGTCCCCCTCTCCGCTTTGGCTCTCAAAAGCAATTGACTAGGTGTTTCGTTTCCGAACCATGATGGTGCTTATTTGGGTGTCAATGTTATTGCTTGTTTGTCTACTTCTGTACAATTAAAGTGAGAGATTTTCATGTGTAAAATCTACTCTTAATATTGTAAATTGGAATATATATGGAGGTTCTTATTTTCATCGTTTCCTTCTTTTATATATATATTTTTATTAATCAATGTTAATCGTTAATTTTTATTAAAATATTAATAGCACCTACAATTTCT
>Glyma19g24400.1 sequence type=CDS gene model=Glyma19g24400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATCAGAGGTTAGTGCAGTTACAAGGGTGGTGGATAAAAATAAGGGCATTGACAAAGGGAAAGGTGTTACCTGGGCTGTTTCTGTTTCTGAAAAAGATTCATTTTCTTCCACAAAGGCTGCACCTTTTTCAAGATGGAAGAAGGGAATTGCGGTAACAGATTTCGTCCTACGACTTGGTGCCATCGGTGCAGCTATGGGTAGCGCTGTTACCATGGGAACCAACGAAGAACAACTACCATTCTTCACGCAGTTCCTCCAGTTCCATGCTCAGTGGAGTGATTTTCCCGTGTTCCAGTTTTTCGTGTTTGCAAACGGAGTAATCAGTGGATATGCTATCCTTAGCCTTCCCTTTTCATATGTGTGCATTGTTCAACCACATGCAGTAAGGCCAAGGCTTCTTCTTATGACCTTCGACACAGTGATGATGGGGCTAATCAGTGTTGCGGCGGCAGGTGCAGCTGCGATTGTGTACGTAGGTCATAATGGGAGTCAAGACGCGAATTGGATGGCTTTTTGCCAGGGATTCACCAACTTTTGTCAAGCTGCTAGTGAGGCTGTGGTCCTTTCATTTGTTGCAGCTGCTTTCTTCTTGTGTTTGGTCCCCCTCTCCGCTTTGGCTCTCAAAAGCAATTGA >Glyma19g24400.2 sequence type=CDS gene model=Glyma19g24400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATCAGAGGTTAGTGCAGTTACAAGGGTGGTGGATAAAAATAAGGGCATTGACAAAGGGAAAGGTGTTACCTGGGCTGTTTCTGTTTCTGAAAAAGATTCATTTTCTTCCACAAAGGCTGCACCTTTTTCAAGATGGAAGAAGGGAATTGCGGTAACAGATTTCGTCCTACGACTTGGTGCCATCGGTGCAGCTATGGGTAGCGCTGTTACCATGGGAACCAACGAAGAACAACTACCATTCTTCACGCAGTTCCTCCAGTTCCATGCTCAGTGGAGTGATTTTCCCGTGTTCCAGTTTTTCGTGTTTGCAAACGGAGTAATCAGTGGATATGCTATCCTTAGCCTTCCCTTTTCATATGTGTGCATTGTTCAACCACATGCAGTAAGGCCAAGGCTTCTTCTTATGACCTTCGACACATTGGGGACTCAGGTGATGATGGGGCTAATCAGTGTTGCGGCGGCAGGTGCAGCTGCGATTGTGTACGTAGGTCATAATGGGAGTCAAGACGCGAATTGGATGGCTTTTTGCCAGGGATTCACCAACTTTTGTCAAGCTGCTAGTGAGGCTGTGGTCCTTTCATTTGTTGCAGCTGCTTTCTTCTTGTGTTTGGTCCCCCTCTCCGCTTTGGCTCTCAAAAGCAATTGA
>Glyma19g24400.1 sequence type=predicted peptide gene model=Glyma19g24400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSEVSAVTRVVDKNKGIDKGKGVTWAVSVSEKDSFSSTKAAPFSRWKKGIAVTDFVLRLGAIGAAMGSAVTMGTNEEQLPFFTQFLQFHAQWSDFPVFQFFVFANGVISGYAILSLPFSYVCIVQPHAVRPRLLLMTFDTVMMGLISVAAAGAAAIVYVGHNGSQDANWMAFCQGFTNFCQAASEAVVLSFVAAAFFLCLVPLSALALKSN* >Glyma19g24400.2 sequence type=predicted peptide gene model=Glyma19g24400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSEVSAVTRVVDKNKGIDKGKGVTWAVSVSEKDSFSSTKAAPFSRWKKGIAVTDFVLRLGAIGAAMGSAVTMGTNEEQLPFFTQFLQFHAQWSDFPVFQFFVFANGVISGYAILSLPFSYVCIVQPHAVRPRLLLMTFDTLGTQVMMGLISVAAAGAAAIVYVGHNGSQDANWMAFCQGFTNFCQAASEAVVLSFVAAAFFLCLVPLSALALKSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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