Glyma19g24400 - SoyBase

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Report for Sequence Feature Glyma19g24400

Feature Type:	gene_model
Chromosome:	Gm19
Start:	29978080
stop:	29980819
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g24400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27370	AT	Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) \| chr2:11708628-11709905 REVERSE LENGTH=221	SoyBase	E_val: 1.00E-54	ISS
GO:0007043	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell junction assembly	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0048226	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Casparian strip	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
PTHR11615	Panther	NITRATE, FROMATE, IRON DEHYDROGENASE	JGI		ISS
PTHR11615:SF54	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04535	PFAM	Domain of unknown function (DUF588)	JGI		ISS
UniRef100_C6T4E0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Casparian strip membrane protein 5 n=1 Tax=Glycine max RepID=CASP5_SOYBN	SoyBase	E_val: 9.00E-74	ISS
UniRef100_I1N7K9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7K9_SOYBN	SoyBase	E_val: 2.00E-144	ISS

Expression Patterns of Glyma19g24400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g24400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g083200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g24400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g24400

Limit To All Plant Sequences

>Glyma19g24400.2   sequence type=transcript   gene model=Glyma19g24400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTTGTATACTATATATATACATGCTTCGATCCTTCAAAGTTCAAATTATTGTTTTCCAATACTTGGAAGTTTAGACAAATACATCACAAGATGAAATCAGAGGTTAGTGCAGTTACAAGGGTGGTGGATAAAAATAAGGGCATTGACAAAGGGAAAGGTGTTACCTGGGCTGTTTCTGTTTCTGAAAAAGATTCATTTTCTTCCACAAAGGCTGCACCTTTTTCAAGATGGAAGAAGGGAATTGCGGTAACAGATTTCGTCCTACGACTTGGTGCCATCGGTGCAGCTATGGGTAGCGCTGTTACCATGGGAACCAACGAAGAACAACTACCATTCTTCACGCAGTTCCTCCAGTTCCATGCTCAGTGGAGTGATTTTCCCGTGTTCCAGTTTTTCGTGTTTGCAAACGGAGTAATCAGTGGATATGCTATCCTTAGCCTTCCCTTTTCATATGTGTGCATTGTTCAACCACATGCAGTAAGGCCAAGGCTTCTTCTTATGACCTTCGACACATTGGGGACTCAGGTGATGATGGGGCTAATCAGTGTTGCGGCGGCAGGTGCAGCTGCGATTGTGTACGTAGGTCATAATGGGAGTCAAGACGCGAATTGGATGGCTTTTTGCCAGGGATTCACCAACTTTTGTCAAGCTGCTAGTGAGGCTGTGGTCCTTTCATTTGTTGCAGCTGCTTTCTTCTTGTGTTTGGTCCCCCTCTCCGCTTTGGCTCTCAAAAGCAATTGACTAGGTGTTTCGTTTCCGAACCATGATGGTGCTTATTTGGGTGTCAATGTTATTGCTTGTTTGTCTACTTCTGTACAATTAAAGTGAGAGATTTTCATGTGTAAAATCTACTCTTAATATTGTAAATTGGAATATATATGGAGGTTCTTATTTTCATCGTTTCCTTCTTTTATATATATATTTTTATTAATCAATGTTAATCGTTAATTTTTATTAAAATATTAATAGCACCTACAATTTCT

Coding sequences of Glyma19g24400

Limit To All Plant Sequences

>Glyma19g24400.1   sequence type=CDS   gene model=Glyma19g24400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAGAGGTTAGTGCAGTTACAAGGGTGGTGGATAAAAATAAGGGCATTGACAAAGGGAAAGGTGTTACCTGGGCTGTTTCTGTTTCTGAAAAAGATTCATTTTCTTCCACAAAGGCTGCACCTTTTTCAAGATGGAAGAAGGGAATTGCGGTAACAGATTTCGTCCTACGACTTGGTGCCATCGGTGCAGCTATGGGTAGCGCTGTTACCATGGGAACCAACGAAGAACAACTACCATTCTTCACGCAGTTCCTCCAGTTCCATGCTCAGTGGAGTGATTTTCCCGTGTTCCAGTTTTTCGTGTTTGCAAACGGAGTAATCAGTGGATATGCTATCCTTAGCCTTCCCTTTTCATATGTGTGCATTGTTCAACCACATGCAGTAAGGCCAAGGCTTCTTCTTATGACCTTCGACACAGTGATGATGGGGCTAATCAGTGTTGCGGCGGCAGGTGCAGCTGCGATTGTGTACGTAGGTCATAATGGGAGTCAAGACGCGAATTGGATGGCTTTTTGCCAGGGATTCACCAACTTTTGTCAAGCTGCTAGTGAGGCTGTGGTCCTTTCATTTGTTGCAGCTGCTTTCTTCTTGTGTTTGGTCCCCCTCTCCGCTTTGGCTCTCAAAAGCAATTGA

>Glyma19g24400.2   sequence type=CDS   gene model=Glyma19g24400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAGAGGTTAGTGCAGTTACAAGGGTGGTGGATAAAAATAAGGGCATTGACAAAGGGAAAGGTGTTACCTGGGCTGTTTCTGTTTCTGAAAAAGATTCATTTTCTTCCACAAAGGCTGCACCTTTTTCAAGATGGAAGAAGGGAATTGCGGTAACAGATTTCGTCCTACGACTTGGTGCCATCGGTGCAGCTATGGGTAGCGCTGTTACCATGGGAACCAACGAAGAACAACTACCATTCTTCACGCAGTTCCTCCAGTTCCATGCTCAGTGGAGTGATTTTCCCGTGTTCCAGTTTTTCGTGTTTGCAAACGGAGTAATCAGTGGATATGCTATCCTTAGCCTTCCCTTTTCATATGTGTGCATTGTTCAACCACATGCAGTAAGGCCAAGGCTTCTTCTTATGACCTTCGACACATTGGGGACTCAGGTGATGATGGGGCTAATCAGTGTTGCGGCGGCAGGTGCAGCTGCGATTGTGTACGTAGGTCATAATGGGAGTCAAGACGCGAATTGGATGGCTTTTTGCCAGGGATTCACCAACTTTTGTCAAGCTGCTAGTGAGGCTGTGGTCCTTTCATTTGTTGCAGCTGCTTTCTTCTTGTGTTTGGTCCCCCTCTCCGCTTTGGCTCTCAAAAGCAATTGA

Predicted protein sequences of Glyma19g24400

Limit To All Plant Sequences

>Glyma19g24400.1   sequence type=predicted peptide   gene model=Glyma19g24400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSEVSAVTRVVDKNKGIDKGKGVTWAVSVSEKDSFSSTKAAPFSRWKKGIAVTDFVLRLGAIGAAMGSAVTMGTNEEQLPFFTQFLQFHAQWSDFPVFQFFVFANGVISGYAILSLPFSYVCIVQPHAVRPRLLLMTFDTVMMGLISVAAAGAAAIVYVGHNGSQDANWMAFCQGFTNFCQAASEAVVLSFVAAAFFLCLVPLSALALKSN*

>Glyma19g24400.2   sequence type=predicted peptide   gene model=Glyma19g24400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSEVSAVTRVVDKNKGIDKGKGVTWAVSVSEKDSFSSTKAAPFSRWKKGIAVTDFVLRLGAIGAAMGSAVTMGTNEEQLPFFTQFLQFHAQWSDFPVFQFFVFANGVISGYAILSLPFSYVCIVQPHAVRPRLLLMTFDTLGTQVMMGLISVAAAGAAAIVYVGHNGSQDANWMAFCQGFTNFCQAASEAVVLSFVAAAFFLCLVPLSALALKSN*

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