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Report for Sequence Feature Glyma19g24375

Feature Type:gene_model
Chromosome:Gm19
Start:29931575
stop:29938227
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g24375
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15415AT Annotation by Michelle Graham. TAIR10: Protein phosphatase 2A regulatory B subunit family protein | chr4:8817707-8819349 FORWARD LENGTH=522 SoyBaseE_val: 0ISS
GO:0006555GO-bp Annotation by Michelle Graham. GO Biological Process: methionine metabolic process SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0090342GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell aging SoyBaseN/AISS
GO:0000159GO-cc Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 2A complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008266GO-mf Annotation by Michelle Graham. GO Molecular Function: poly(U) RNA binding SoyBaseN/AISS
KOG2085 KOG Serine/threonine protein phosphatase 2A, regulatory subunit JGI ISS
PTHR10257Panther PROTEIN PHOSPHATASE 2A, REGULATORY SUBUNIT JGI ISS
PF01603PFAM Protein phosphatase 2A regulatory B subunit (B56 family) JGI ISS
UniRef100_E5GC68UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2a n=1 Tax=Cucumis melo subsp. melo RepID=E5GC68_CUCME SoyBaseE_val: 0ISS
UniRef100_UPI000233ED4FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233ED4F related cluster n=1 Tax=unknown RepID=UPI000233ED4F SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g24375
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g24375 not represented in the dataset
Glyma19g24375 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g24375 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g082900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g24375
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g24375
>Glyma19g24375.2   sequence type=transcript   gene model=Glyma19g24375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAGGAGAGAAAGAAAAAGGTAATATCAACAACAACACCATTAACAGTTTTTTTTTTTTGTAGCAAAACCTCAATAACAGCAACAACTTCGCGCAGAAACTGCTTTGCCTTTCCACTCAGTTCATTCAGCAGCAAGACATTATTCTCTGTCTCAATTTCCACTTTCGTTATACTATACCATCCCTCTCCTTCATTCTTAAAAATTCTTTTGCTTTTTCCTCCTTTTATTTTTCCACCTTTTCAAGTTTAAGATTTTTCTCTCTCTTCCTCTGCAACCCACTTTTTTTTTTTCAAAAAAACTCGATTGCTAATGTAACGTGTTTGCTCGAAACTTTGAAGGGCACTGTTGCTGAGGATTTTATATGGGCCATTTCGATCAGACCCAGATTCTGTTTCTGTCTGATCCAACTATATTTTCAACTGAAATTTTCATATAAGGAGGACGAGAAGATTTTCCCTCAATTGAAGCAGGGTGGATGCTTCTGCTTGTGGCTTCTCTCAATTGGAATGGCTTGTTAATAAGTTTAGGAAAGATCAGTGTTTTTTTTATTGGAACGATAGAAGTGGAGTTCTAGGGTTTTTGTTTCTCTTGGCTGTCATTTTTGCTTGAGTTCAACTTATGGGAACTGGGATATCTTGCCACTAGAGATTGTTGTTTTGTTTGATTTGAAGGGCTTTAGCCAAGTAGTGTGCTCTGGAAGTGAAGTGCATGAGAAGGGTTTTTGTGTTGCACCGATTTTAAGTCATGATCAAACAGATATTAAATAGGCTCCAACGGAAACCCTCCAAATCAGTGGAAAATCATGAAGGAGGGGGAGCGATAACATCCCCTTCAACTACTTCTACCAGTTCAAGAAGCAGTGATTTAGCACGTTTCCATTATGGAAACTCAACCGCTTCGCCTCTTTCAGGCCTTAATTCTAATTCATTTCCTGGATTAAATCATGGTGACAAGTTTCCCCATGCTGTGAATTCAAAGCTTAATGGGAGTTTGGCAGCTTCCTCGTATGAAGCCTTGCCAAGTTTTAAAGATGTTCCAAATTCAGAGAAGCAGAACTTGTTTATAAGAAAGGTGCAAATGTGTTGTTTTGTGTTTGACTTCACTGACCCTACAAAGAACCTCAAAGAGAAGGACATTAAGCGGCAAACATTAGTTGAACTTGTGGATTATGTTTCTTCTGCTAATAGCAAGTTTACAGAAATAATGATGCAAGAAATTGTGAAAATGGTATCTGTAAATTTGTTCCGGACGTGGACCTCCCCCCTCCGTGAAAACAAAGTTCTAGAAGCCTTTGATGTGGAAGATGAAGAACCTTTGATGGACCCTGCATGGCCTCACTTTCAAATTGTATATGAACTCCTTCTAAGGTTTGTCGCATCACCTGAGACTGATGCAAAATTAGCAAAAAGATATGTCGATCATTCATTTGTTCTCAAACTATTAGACCTATTTGATTCAGAAGATCCCAGGGAGCGGGATTACTTGAAGACAGTTCTTCATCGTATATATGGGAAATTTATGGTGCACCGACCCTTCATTAGGAAAGCAATCAACAATATATTTTATCAGTTCATTTTTGAAACTGAGAAACATAATGGGATTGCAGAGCTTTTAGAAATTTTGGGGAGTATAATCAACGGATTTGCTTTGCCACTGAAAGAAGAACACAAATTATTTCTTGCGCGAGTGCTCATTCCTCTTCATAAACCAAAATGCATACCAATTTACCATCAGCAGTTATCATACTGCATCACCCAATTTGTGGAAAAGGACTGCAAGCTTGCTGATACTGTCATCCAGGGATTACTAAAATATTGGCCTATTACAAACAGTTCCAAGGAGGTTATGTTTCTAGGTGAGCTGGAGGAAATCTTAGAAGTAACTCAACCTGCAGAGTTTCAACGTTGTATGGTACCATTGTTCCACCAAATAAGTCGTTGTTTGAGCAGTTCACATTTCCAGGTAGCAGAGAGGGCTTTGTTCTTATGGAACAATGATCACATTGAGAACCTAATCAAGCAGAACTGCAAAATTATTCTTCCTATTGTATTGCCTGCTCTAGAGAAAAATGCTCGAAACCACTGGAATCAGGCAGTCCAAAGTTTGACAATAAATGTACGCAAGATCTTTGCTGATACCGATCCTGAACTCTTGGAGGAGTGCCTGCGCAAGTTCAAGGAAGATGAAGCACAAGAGAAAGCTTTGAAGTTGAAGCGAGAGGCTACATGGAAGCGCTTAGAAGAGATTGCAGCCATGAAAGCTGCAAGCAATGAACCAGTTCTTGTTTCTCCCAGAACGGCGTCTTCTTCTGGCTAGGCAATTGTGCGCAGTTGAAGCAATCCTTAATTTTTTGGCATTGCAGGGTCCAAAAAGCATGAAGGTACAAAAGGTTTTGTTTGTTCCCTTGGCCACATGATGGAGTCACAATGCGATAGGGTGCAATGTGGCTGTGTCATGGTTTTGCATGTGCAAGCATAGAATGTATATATTGAATTGGATAGAAATAAATGGGTGCCTCAGATATAGAGTCAAGACACAGTTTATTTGGAAAATTTGCTTTTGTAAAGCTGGCGTCTGCAGTTTGATGTAATTAAATTCCTGAGTATATTGAACTTGGAATCTTTTTACCCTTTTTATTTCATACTCTCATTCCACCATCTATTAAGCGATTATAAATTTATTATGTTGTTAAGC
Coding sequences of Glyma19g24375
>Glyma19g24375.1   sequence type=CDS   gene model=Glyma19g24375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAAACAGATATTAAATAGGCTCCAACGGAAACCCTCCAAATCAGTGGAAAATCATGAAGGAGGGGGAGCGATAACATCCCCTTCAACTACTTCTACCAGTTCAAGAAGCAGTGATTTAGCACGTTTCCATTATGGAAACTCAACCGCTTCGCCTCTTTCAGGCCTTAATTCTAATTCATTTCCTGGATTAAATCATGGTGACAAGTTTCCCCATGCTGTGAATTCAAAGCTTAATGGGAGTTTGGCAGCTTCCTCGTATGAAGCCTTGCCAAGTTTTAAAGATGTTCCAAATTCAGAGAAGCAGAACTTGTTTATAAGAAAGGTGCAAATGTGTTGTTTTGTGTTTGACTTCACTGACCCTACAAAGAACCTCAAAGAGAAGGACATTAAGCGGCAAACATTAGTTGAACTTGTGGATTATGTTTCTTCTGCTAATAGCAAGTTTACAGAAATAATGATGCAAGAAATTGTGAAAATGGTATCTGTAAATTTGTTCCGGACGTGGACCTCCCCCCTCCGTGAAAACAAAGTTCTAGAAGCCTTTGATGTGGAAGATGAAGAACCTTTGATGGACCCTGCATGGCCTCACTTTCAAATTGTATATGAACTCCTTCTAAGGTTTGTCGCATCACCTGAGACTGATGCAAAATTAGCAAAAAGATATGTCGATCATTCATTTGTTCTCAAACTATTAGACCTATTTGATTCAGAAGATCCCAGGGAGCGGGATTACTTGAAGACAGTTCTTCATCGTATATATGGGAAATTTATGGTGCACCGACCCTTCATTAGGAAAGCAATCAACAATATATTTTATCAGTTCATTTTTGAAACTGAGAAACATAATGGGATTGCAGAGCTTTTAGAAATTTTGGGGAGTATAATCAACGGATTTGCTTTGCCACTGAAAGAAGAACACAAATTATTTCTTGCGCGAGTGCTCATTCCTCTTCATAAACCAAAATGCATACCAATTTACCATCAGCAGTTATCATACTGCATCACCCAATTTGTGGAAAAGGACTGCAAGCTTGCTGATACTGTCATCCAGGGATTACTAAAATATTGGCCTATTACAAACAGTTCCAAGGAGGTTATGTTTCTAGGTGAGCTGGAGGAAATCTTAGAAGTAACTCAACCTGCAGAGTTTCAACGTTGTATGGTACCATTGTTCCACCAAATAAGTCGTTGTTTGAGCAGTTCACATTTCCAGGTAGCAGAGAGGGCTTTGTTCTTATGGAACAATGATCACATTGAGAACCTAATCAAGCAGAACTGCAAAATTATTCTTCCTATTGTATTGCCTGCTCTAGAGAAAAATGCTCGAAACCACTGGAATCAGGCAGTCCAAAGTTTGACAATAAATGTACGCAAGATCTTTGCTGATACCGATCCTGAACTCTTGGAGGAGTGCCTGCGCAAGTTCAAGGAAGATGAAGCACAAGAGAAAGCTTTGAAGTTGAAGCGAGAGGCTACATGGAAGCGCTTAGAAGAGATTGCAGCCATGAAAGCTGCAAGCAATGAACCAGTTCTTGTTTCTCCCAGAACGGCGTCTTCTTCTGGCTAG

>Glyma19g24375.2   sequence type=CDS   gene model=Glyma19g24375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAAACAGATATTAAATAGGCTCCAACGGAAACCCTCCAAATCAGTGGAAAATCATGAAGGAGGGGGAGCGATAACATCCCCTTCAACTACTTCTACCAGTTCAAGAAGCAGTGATTTAGCACGTTTCCATTATGGAAACTCAACCGCTTCGCCTCTTTCAGGCCTTAATTCTAATTCATTTCCTGGATTAAATCATGGTGACAAGTTTCCCCATGCTGTGAATTCAAAGCTTAATGGGAGTTTGGCAGCTTCCTCGTATGAAGCCTTGCCAAGTTTTAAAGATGTTCCAAATTCAGAGAAGCAGAACTTGTTTATAAGAAAGGTGCAAATGTGTTGTTTTGTGTTTGACTTCACTGACCCTACAAAGAACCTCAAAGAGAAGGACATTAAGCGGCAAACATTAGTTGAACTTGTGGATTATGTTTCTTCTGCTAATAGCAAGTTTACAGAAATAATGATGCAAGAAATTGTGAAAATGGTATCTGTAAATTTGTTCCGGACGTGGACCTCCCCCCTCCGTGAAAACAAAGTTCTAGAAGCCTTTGATGTGGAAGATGAAGAACCTTTGATGGACCCTGCATGGCCTCACTTTCAAATTGTATATGAACTCCTTCTAAGGTTTGTCGCATCACCTGAGACTGATGCAAAATTAGCAAAAAGATATGTCGATCATTCATTTGTTCTCAAACTATTAGACCTATTTGATTCAGAAGATCCCAGGGAGCGGGATTACTTGAAGACAGTTCTTCATCGTATATATGGGAAATTTATGGTGCACCGACCCTTCATTAGGAAAGCAATCAACAATATATTTTATCAGTTCATTTTTGAAACTGAGAAACATAATGGGATTGCAGAGCTTTTAGAAATTTTGGGGAGTATAATCAACGGATTTGCTTTGCCACTGAAAGAAGAACACAAATTATTTCTTGCGCGAGTGCTCATTCCTCTTCATAAACCAAAATGCATACCAATTTACCATCAGCAGTTATCATACTGCATCACCCAATTTGTGGAAAAGGACTGCAAGCTTGCTGATACTGTCATCCAGGGATTACTAAAATATTGGCCTATTACAAACAGTTCCAAGGAGGTTATGTTTCTAGGTGAGCTGGAGGAAATCTTAGAAGTAACTCAACCTGCAGAGTTTCAACGTTGTATGGTACCATTGTTCCACCAAATAAGTCGTTGTTTGAGCAGTTCACATTTCCAGGTAGCAGAGAGGGCTTTGTTCTTATGGAACAATGATCACATTGAGAACCTAATCAAGCAGAACTGCAAAATTATTCTTCCTATTGTATTGCCTGCTCTAGAGAAAAATGCTCGAAACCACTGGAATCAGGCAGTCCAAAGTTTGACAATAAATGTACGCAAGATCTTTGCTGATACCGATCCTGAACTCTTGGAGGAGTGCCTGCGCAAGTTCAAGGAAGATGAAGCACAAGAGAAAGCTTTGAAGTTGAAGCGAGAGGCTACATGGAAGCGCTTAGAAGAGATTGCAGCCATGAAAGCTGCAAGCAATGAACCAGTTCTTGTTTCTCCCAGAACGGCGTCTTCTTCTGGCTAG
Predicted protein sequences of Glyma19g24375
>Glyma19g24375.1   sequence type=predicted peptide   gene model=Glyma19g24375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKQILNRLQRKPSKSVENHEGGGAITSPSTTSTSSRSSDLARFHYGNSTASPLSGLNSNSFPGLNHGDKFPHAVNSKLNGSLAASSYEALPSFKDVPNSEKQNLFIRKVQMCCFVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANSKFTEIMMQEIVKMVSVNLFRTWTSPLRENKVLEAFDVEDEEPLMDPAWPHFQIVYELLLRFVASPETDAKLAKRYVDHSFVLKLLDLFDSEDPRERDYLKTVLHRIYGKFMVHRPFIRKAINNIFYQFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLARVLIPLHKPKCIPIYHQQLSYCITQFVEKDCKLADTVIQGLLKYWPITNSSKEVMFLGELEEILEVTQPAEFQRCMVPLFHQISRCLSSSHFQVAERALFLWNNDHIENLIKQNCKIILPIVLPALEKNARNHWNQAVQSLTINVRKIFADTDPELLEECLRKFKEDEAQEKALKLKREATWKRLEEIAAMKAASNEPVLVSPRTASSSG*

>Glyma19g24375.2   sequence type=predicted peptide   gene model=Glyma19g24375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKQILNRLQRKPSKSVENHEGGGAITSPSTTSTSSRSSDLARFHYGNSTASPLSGLNSNSFPGLNHGDKFPHAVNSKLNGSLAASSYEALPSFKDVPNSEKQNLFIRKVQMCCFVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANSKFTEIMMQEIVKMVSVNLFRTWTSPLRENKVLEAFDVEDEEPLMDPAWPHFQIVYELLLRFVASPETDAKLAKRYVDHSFVLKLLDLFDSEDPRERDYLKTVLHRIYGKFMVHRPFIRKAINNIFYQFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLARVLIPLHKPKCIPIYHQQLSYCITQFVEKDCKLADTVIQGLLKYWPITNSSKEVMFLGELEEILEVTQPAEFQRCMVPLFHQISRCLSSSHFQVAERALFLWNNDHIENLIKQNCKIILPIVLPALEKNARNHWNQAVQSLTINVRKIFADTDPELLEECLRKFKEDEAQEKALKLKREATWKRLEEIAAMKAASNEPVLVSPRTASSSG*






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