Glyma19g24360 - SoyBase

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Report for Sequence Feature Glyma19g24360

Feature Type:	gene_model
Chromosome:	Gm19
Start:	29884534
stop:	29887695
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g24360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51280	AT	Annotation by Michelle Graham. TAIR10: DEAD-box protein abstrakt, putative \| chr5:20841456-20843645 FORWARD LENGTH=591	SoyBase	E_val: 0	ISS
GO:0000741	GO-bp	Annotation by Michelle Graham. GO Biological Process: karyogamy	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0341	KOG	DEAD-box protein abstrakt	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF46	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_G7I9M7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7I9M7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F456	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F456 related cluster n=1 Tax=unknown RepID=UPI000233F456	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g24360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g24360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g082800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g24360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g24360

Limit To All Plant Sequences

>Glyma19g24360.3   sequence type=transcript   gene model=Glyma19g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATGTCTTCCGTCTTCATATGCTTTCCAACACAGACATATGGGACGTCGAGTACTGAACGTAAACAATGACTATCACCTGCATGACCAACTTCATTGAAAGACACCGACACACTCCGGCGAACATAACTATCTTTTGCTTTTTCACATTTTTATACAATATAAAAACTTACTTTCAAACACTCAATCACGTGGGTCATTTTTGAAAGCCTAGATTGCTTCAATTGACTGTCAAACGGAACACCTACACAAGCTCTTCATGAGGAAGCCATTCTCATCCAACGGCTGCCCTTACTTATGCACGGTACAAGACCCATCCTACTCGTGCACCTTAGAATTTGTCCTAACACTGATATATGATTGGGGATTTTGGTTAATGGAAAGAGGAAACCAAACCCTAATAAGTCCCAAATCACAATCACAATATCAGAAGCGATGTCTATTATTTTGTCTCTGCAGTTCACTCCTTACGAATTCCTAGTATCGCCGATCGCTGTGGCCTTTCACTTTCTTCTCTACTTAGCGCGTATAACCACAACAACACTTCGCAGAACCAAAAGAACTGTTACATTGTGCTCAAACTGGCGGCGAATATGGAGGAAGAAGATGATTATGTTGAGTATGTGCCCGTGGCCAAGCGTCGGGCCTTGGAAGCTCAGAATATTCTCCAACGCAAAGGGAAGGCCTCTGCTGCCACTGACGATGATTTGGAGAAACAAAGAGTGGCTGAAACTAAGCCCAGTCTTCTGGTTAAAGCGTCACAGCTGAAACGAGAGCAACCCGAGATCAGTGTGACGGAGCAGATCGTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCAGATAGGAAAACCCTCATGTCTGTCCGTGAATTGGCTAAGGGGATTACTTATACGGAACCTTTGCCTACAGGGTGGAAGCCGCCTTTGCATGTGAGAAGGATGTCTAAGAAGGAGTGTGATTTGATTCGAAAGCAGTGGCATATAATTGCTGATGGGGGTGATATCCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCAGAGCCAGTTTTGAAGAAGTTGAAAGCTAAGGGGATTGTACAACCAACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCATTCACAGGCTCAGGAAAAACTCTGGTCTTTGTGCTTCCAATGATCATGGTGGCAATGCAAGAGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTGATTATTTGTCCATCAAGGGAACTGGCAAGGCAGACGTTTGAAGTGATTGAACAATTCTTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTCAGGCCTTTGCTCTGTATTGGTGGAGTGGATATGAGATCGCAGCTTGATATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGCTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTGGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCCTACCAAAATTCAGAACTTTGCCAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGGCGTGCAGGGGCTGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGTCTACAAAAAACCCCACCTCCTGTTCTGATATTCTGTGAGAATAAGGCTGACGTTGATGACATCCATGAATACCTTCTCTTGAAAGGAGTGGAAGCAGTGGCCATCCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCTATTGCTGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGATTGGAAGGACTGGACGATGTGGAAAGACCGGTATAGCGACAACATTTATAAACAAGAATCAAAGTGAGACAACATTACTTGACTTGAAACACCTTTTGCAAGAAGCAAAACAAAGGATTCCCCCTGTTTTGGCTGAGTTGAATGATCCAATGGAAGATAATGAAGAAATCACAGACATAAGTGGGGTCAAAGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGAGATTGTCCCAAATTAGAACACCAGAAGAGCATGGCAATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGAAAGGCATCCTTTGTGTACCAATTTTCTCAAACACTACTAGTCCAGGATGATATGATGATTTGCATTGGAAAGTAGTATAGTCAAGGTCATTTGTTAGGAGTGGATGCCTTCTGCTCTGGTATTTATTTTCCTAGAAGATTTATGTTTGTTTATGATGAGTGTAAATAATGTGTCTTGCATATGCAAGAAATCTTTAACGACAATTGTACATTTATTTGTATGGAGAACAGTGTAAAGAGCACAAATCGATGTGCATCTTTTCTTAACTTTAAACTTGACTTTTGCAACACCATATTAGCAATTTTTCCAATCCTAATTCCCCCCACTAAAATAGTCTCTTCAGCTCAATGCAAGGGTCTCGT

Coding sequences of Glyma19g24360

Limit To All Plant Sequences

>Glyma19g24360.2   sequence type=CDS   gene model=Glyma19g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGAAGATGATTATGTTGAGTATGTGCCCGTGGCCAAGCGTCGGGCCTTGGAAGCTCAGAATATTCTCCAACGCAAAGGGAAGGCCTCTGCTGCCACTGACGATGATTTGGAGAAACAAAGAGTGGCTGAAACTAAGCCCAGTCTTCTGGTTAAAGCGTCACAGCTGAAACGAGAGCAACCCGAGATCAGTGTGACGGAGCAGATCGTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCAGATAGGAAAACCCTCATGTCTGTCCGTGAATTGGCTAAGGGGATTACTTATACGGAACCTTTGCCTACAGGGTGGAAGCCGCCTTTGCATGTGAGAAGGATGTCTAAGAAGGAGTGTGATTTGATTCGAAAGCAGTGGCATATAATTGCTGATGGGGGTGATATCCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCAGAGCCAGTTTTGAAGAAGTTGAAAGCTAAGGGGATTGTACAACCAACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCATTCACAGGCTCAGGAAAAACTCTGGTCTTTGTGCTTCCAATGATCATGGTGGCAATGCAAGAGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTGATTATTTGTCCATCAAGGGAACTGGCAAGGCAGACGTTTGAAGTGATTGAACAATTCTTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTCAGGCCTTTGCTCTGTATTGGTGGAGTGGATATGAGATCGCAGCTTGATATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGCTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTGGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCCTACCAAAATTCAGAACTTTGCCAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGGCGTGCAGGGGCTGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGTCTACAAAAAACCCCACCTCCTGTTCTGATATTCTGTGAGAATAAGGCTGACGTTGATGACATCCATGAATACCTTCTCTTGAAAGGAGTGGAAGCAGTGGCCATCCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCTATTGCTGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTATGATATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGAAGGACTGGACGATGTGGAAAGACCGGTATAGCGACAACATTTATAAACAAGAATCAAAGTGAGACAACATTACTTGACTTGAAACACCTTTTGCAAGAAGCAAAACAAAGGATTCCCCCTGTTTTGGCTGAGTTGAATGATCCAATGGAAGATAATGAAGAAATCACAGACATAAGTGGGGTCAAAGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGAGATTGTCCCAAATTAGAACACCAGAAGAGCATGGCAATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA

>Glyma19g24360.3   sequence type=CDS   gene model=Glyma19g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGAAGATGATTATGTTGAGTATGTGCCCGTGGCCAAGCGTCGGGCCTTGGAAGCTCAGAATATTCTCCAACGCAAAGGGAAGGCCTCTGCTGCCACTGACGATGATTTGGAGAAACAAAGAGTGGCTGAAACTAAGCCCAGTCTTCTGGTTAAAGCGTCACAGCTGAAACGAGAGCAACCCGAGATCAGTGTGACGGAGCAGATCGTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCAGATAGGAAAACCCTCATGTCTGTCCGTGAATTGGCTAAGGGGATTACTTATACGGAACCTTTGCCTACAGGGTGGAAGCCGCCTTTGCATGTGAGAAGGATGTCTAAGAAGGAGTGTGATTTGATTCGAAAGCAGTGGCATATAATTGCTGATGGGGGTGATATCCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCAGAGCCAGTTTTGAAGAAGTTGAAAGCTAAGGGGATTGTACAACCAACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCATTCACAGGCTCAGGAAAAACTCTGGTCTTTGTGCTTCCAATGATCATGGTGGCAATGCAAGAGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTGATTATTTGTCCATCAAGGGAACTGGCAAGGCAGACGTTTGAAGTGATTGAACAATTCTTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTCAGGCCTTTGCTCTGTATTGGTGGAGTGGATATGAGATCGCAGCTTGATATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGCTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTGGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCCTACCAAAATTCAGAACTTTGCCAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGGCGTGCAGGGGCTGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGTCTACAAAAAACCCCACCTCCTGTTCTGATATTCTGTGAGAATAAGGCTGACGTTGATGACATCCATGAATACCTTCTCTTGAAAGGAGTGGAAGCAGTGGCCATCCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCTATTGCTGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGATTGGAAGGACTGGACGATGTGGAAAGACCGGTATAG

Predicted protein sequences of Glyma19g24360

Limit To All Plant Sequences

>Glyma19g24360.2   sequence type=predicted peptide   gene model=Glyma19g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEDDYVEYVPVAKRRALEAQNILQRKGKASAATDDDLEKQRVAETKPSLLVKASQLKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLHVRRMSKKECDLIRKQWHIIADGGDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTFEVIEQFLIPLKEAGYPELRPLLCIGGVDMRSQLDIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNEEITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI*

>Glyma19g24360.3   sequence type=predicted peptide   gene model=Glyma19g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEDDYVEYVPVAKRRALEAQNILQRKGKASAATDDDLEKQRVAETKPSLLVKASQLKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLHVRRMSKKECDLIRKQWHIIADGGDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTFEVIEQFLIPLKEAGYPELRPLLCIGGVDMRSQLDIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLEGLDDVERPV*

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