Report for Sequence Feature Glyma19g24310
Feature Type: gene_model
Chromosome: Gm19
Start: 29780443
stop: 29787869
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g24310
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G60170 AT
Annotation by Michelle Graham. TAIR10: pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485
SoyBase E_val: 0 ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2574
KOG
mRNA splicing factor PRP31
JGI ISS
PTHR13904 Panther
PRE-MRNA SPLICING FACTOR PRP31
JGI ISS
PF01798 PFAM
Putative snoRNA binding domain
JGI ISS
PF08060 PFAM
NOSIC (NUC001) domain
JGI ISS
PF09785 PFAM
Prp31 C terminal domain
JGI ISS
UniRef100_A2Q2G1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC n=1 Tax=Medicago truncatula RepID=A2Q2G1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N7K6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7K6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g24310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g24310
Paralog Evidence Comments
Glyma16g06810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g24310 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g082500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g24310
Coding sequences of Glyma19g24310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g24310.1 sequence type=CDS gene model=Glyma19g24310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCACGCTTGCCGATTCTTTTCTCGCCGACCTCGATGAACTCTCTGATAACGAGGCTGAAATTCCCGAGGATAACGATGTGGATGCCGCAGACATGGAAGAGGATGTCGATGGCGACCTTGCCGACCTAGAAAACCTAAACTATGATGACTTGGACAGTGTTTCCAAGTTGCAGAAAACCCAGAGGTACACTGATGTTATCCAGAAAGTGGAAGAGGCACTTAATAAAAAGGAGTCTGAGGTCTTGTTTCAGGTAGTGGATATAGAAGATGATCCTGAATACCAACTGATTGTGGATTGCAATGCACTGTCAGTTGATATTGAAAATGAAATTGTTATTATTCACAACTTTATTCGTGATAAGTATCGGTTGAAATTTCCGGAGCTTGAGTCACTGGTGCATCACCCGATTGATTATGCTCGTGTTGTTAAGAAGATAGGAAATGAAATGGATCTGACTCTTGTGGATTTAGAAGGGCTTTTACCCTCGGCTATTATTATGGTTGTCTCTGTTACAGCATCAACTACAACTGGAAAGCCTCTCCCAGAAGAAGTGCTTAGTAAGACAGTTGAGGCCTGTGATCGAGCTCTTGATCTTGACTCAGCAAAGAAGAAAGTTCTTGATTTCGTTGAGAGTAGAATGGGCTACATTGCACCTAATCTTTCTGCTATAGTTGGGAGTGCTGTTGCAGCTAAACTCATGGGGACAGCTGGTGGTCTAGCATCTCTTGCAAAGATGCCTGCTTGTAATGTTCAGCTTCTTGGTGCCAAGAAAAAGAATCTTGCTGGGTTCTCCACAGCAACATCTCAATTTCGTGTAGGTTACCTTGAGCAAACAGAAATATTTCAGACTACTCCTCCTTCTCTAAGGATGCGAGCATGCCGACTCCTGGCTGCAAAGTCTACACTTGCAGCCCGAGTAGATTCAATACGTGGGGATCCATCTGGAAAGACTGGAAGGGCTTTCAAGGATGAGATTCACAAAAAAATTGAGAAGTGGCAGGAGCCCCCTCCTGCTAAGCAACCAAAACCGCTTCCAGTTCCAGATTCTGAGCCTAAAAAGAAGAGAGGTGGTCGTCGTCTTAGGAAGATGAAGGAAAGGTATGCAATAACAGACATGAGGAAGTTAGCCAATAGGATGCAATTTGGAGTCCCAGAAGAGAGTTCATTAGGAGATGGTCTGGGTGAGGGCTATGGAATGCTTGGTCAGGCTGGCAGTGGCAAGCTTCGTGTGTCTGTTGGTCAAAGCAAACTTGCAGCAAAAGTTGCTAAAAAATTCAAGGAAAAGAATTATGGTAGCAGTGGTGCTACCTCTGGTTTGACATCAAGTCTTGCATTCACACCAGTGCAGGGGATTGAGCTGTCAAATCCACAGGCTCATGCACACCAACTTGGTAGTGGAACTCAAAGCACGTATTTCTCTGAAACTGGAACATTTTCAAAGATCAAGAGGACATGA
Predicted protein sequences of Glyma19g24310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g24310.1 sequence type=predicted peptide gene model=Glyma19g24310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATLADSFLADLDELSDNEAEIPEDNDVDAADMEEDVDGDLADLENLNYDDLDSVSKLQKTQRYTDVIQKVEEALNKKESEVLFQVVDIEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTTGKPLPEEVLSKTVEACDRALDLDSAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLASLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQTTPPSLRMRACRLLAAKSTLAARVDSIRGDPSGKTGRAFKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKKFKEKNYGSSGATSGLTSSLAFTPVQGIELSNPQAHAHQLGSGTQSTYFSETGTFSKIKRT*