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Report for Sequence Feature Glyma19g24310

Feature Type:gene_model
Chromosome:Gm19
Start:29780443
stop:29787869
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60170AT Annotation by Michelle Graham. TAIR10: pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485 SoyBaseE_val: 0ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2574 KOG mRNA splicing factor PRP31 JGI ISS
PTHR13904Panther PRE-MRNA SPLICING FACTOR PRP31 JGI ISS
PF01798PFAM Putative snoRNA binding domain JGI ISS
PF08060PFAM NOSIC (NUC001) domain JGI ISS
PF09785PFAM Prp31 C terminal domain JGI ISS
UniRef100_A2Q2G1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC n=1 Tax=Medicago truncatula RepID=A2Q2G1_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N7K6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7K6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma16g06810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g082500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g24310.1   sequence type=CDS   gene model=Glyma19g24310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACGCTTGCCGATTCTTTTCTCGCCGACCTCGATGAACTCTCTGATAACGAGGCTGAAATTCCCGAGGATAACGATGTGGATGCCGCAGACATGGAAGAGGATGTCGATGGCGACCTTGCCGACCTAGAAAACCTAAACTATGATGACTTGGACAGTGTTTCCAAGTTGCAGAAAACCCAGAGGTACACTGATGTTATCCAGAAAGTGGAAGAGGCACTTAATAAAAAGGAGTCTGAGGTCTTGTTTCAGGTAGTGGATATAGAAGATGATCCTGAATACCAACTGATTGTGGATTGCAATGCACTGTCAGTTGATATTGAAAATGAAATTGTTATTATTCACAACTTTATTCGTGATAAGTATCGGTTGAAATTTCCGGAGCTTGAGTCACTGGTGCATCACCCGATTGATTATGCTCGTGTTGTTAAGAAGATAGGAAATGAAATGGATCTGACTCTTGTGGATTTAGAAGGGCTTTTACCCTCGGCTATTATTATGGTTGTCTCTGTTACAGCATCAACTACAACTGGAAAGCCTCTCCCAGAAGAAGTGCTTAGTAAGACAGTTGAGGCCTGTGATCGAGCTCTTGATCTTGACTCAGCAAAGAAGAAAGTTCTTGATTTCGTTGAGAGTAGAATGGGCTACATTGCACCTAATCTTTCTGCTATAGTTGGGAGTGCTGTTGCAGCTAAACTCATGGGGACAGCTGGTGGTCTAGCATCTCTTGCAAAGATGCCTGCTTGTAATGTTCAGCTTCTTGGTGCCAAGAAAAAGAATCTTGCTGGGTTCTCCACAGCAACATCTCAATTTCGTGTAGGTTACCTTGAGCAAACAGAAATATTTCAGACTACTCCTCCTTCTCTAAGGATGCGAGCATGCCGACTCCTGGCTGCAAAGTCTACACTTGCAGCCCGAGTAGATTCAATACGTGGGGATCCATCTGGAAAGACTGGAAGGGCTTTCAAGGATGAGATTCACAAAAAAATTGAGAAGTGGCAGGAGCCCCCTCCTGCTAAGCAACCAAAACCGCTTCCAGTTCCAGATTCTGAGCCTAAAAAGAAGAGAGGTGGTCGTCGTCTTAGGAAGATGAAGGAAAGGTATGCAATAACAGACATGAGGAAGTTAGCCAATAGGATGCAATTTGGAGTCCCAGAAGAGAGTTCATTAGGAGATGGTCTGGGTGAGGGCTATGGAATGCTTGGTCAGGCTGGCAGTGGCAAGCTTCGTGTGTCTGTTGGTCAAAGCAAACTTGCAGCAAAAGTTGCTAAAAAATTCAAGGAAAAGAATTATGGTAGCAGTGGTGCTACCTCTGGTTTGACATCAAGTCTTGCATTCACACCAGTGCAGGGGATTGAGCTGTCAAATCCACAGGCTCATGCACACCAACTTGGTAGTGGAACTCAAAGCACGTATTTCTCTGAAACTGGAACATTTTCAAAGATCAAGAGGACATGA

>Glyma19g24310.1   sequence type=predicted peptide   gene model=Glyma19g24310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLADSFLADLDELSDNEAEIPEDNDVDAADMEEDVDGDLADLENLNYDDLDSVSKLQKTQRYTDVIQKVEEALNKKESEVLFQVVDIEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTTGKPLPEEVLSKTVEACDRALDLDSAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLASLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQTTPPSLRMRACRLLAAKSTLAARVDSIRGDPSGKTGRAFKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKKFKEKNYGSSGATSGLTSSLAFTPVQGIELSNPQAHAHQLGSGTQSTYFSETGTFSKIKRT*







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