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Report for Sequence Feature Glyma19g23910

Feature Type:gene_model
Chromosome:Gm19
Start:29459872
stop:29461780
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g23910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12560AT Annotation by Michelle Graham. TAIR10: F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413 SoyBaseE_val: 5.00E-23ISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042177GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF00646PFAM F-box domain JGI ISS
PF07734PFAM F-box associated JGI ISS
UniRef100_G7JZ94UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7JZ94_MEDTR SoyBaseE_val: 5.00E-180ISS
UniRef100_UPI000233F2F2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F2F2 related cluster n=1 Tax=unknown RepID=UPI000233F2F2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g23910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g23910 not represented in the dataset
Glyma19g23910 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g23910
ParalogEvidenceComments
Glyma16g06890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g23910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g081500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g23910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g23910
>Glyma19g23910.1   sequence type=CDS   gene model=Glyma19g23910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATGGAGCATTTGCCACGAGAATTGGTGTCCAACGTGCTCTCCAGGTTGCCAGCGAAGGTGTTGCTGCTATGCAAGTGTGTGTGCAACTCCTGGTTCGATCTCATAACCGATCCTCATTTTGTTTCCAATTACTATGTTGTCTACAACAGTCTCCAGAGCCAAGAGGAGCATCTCTTGGTGATCCGGAGACCCTTTTTCTCTGGCCTCAAAACTTACATTTCTGTTCTTTCTTGGAACACCAATGACCCCAAAAAGCACGTTTCTTCTGATGTTTTAAACCCTCCCTATGAATACAACTCTGACCACAAATACTGGACCGAAATCTTGGGTCCTTGCAATGGCATATACTTTCTTGAAGGCAATCCCAATGTCTTGATGAACCCTTCATTGAGGGAGTTCAAGGTTTTGCCTGAATCCCATTTTACTAGCCCACATGGGACTTACACATTCACTGATTATGCTGGCTTTGGCTTTGACCCCAAAACCAATGACTACAAAGTTGTAGTGCTCAAAGACCTTTGGTTTAAGGAAACAGATGAAAGACAACTTGGGTATTGGAGTGCTGAGTTGTATAGCCTCAATTCAAACTCTTGGAGAAAACTTGATCCCTCTCTTCTCCCTCTTCCAATTGAAATCTGGGGTTCTTCTCGGGTTTTCACTTACGCAAACAATTGTTGCCACTGGTGGGGCTTTGTTGAAGAGTCTGATGCAACACAAGATGTTGTTCTAGCATTTGATATGGTCAAAGAATCGTTTAGGAAGATAAGGGTGCCAAAAATTCGCGATTCTTCAGATGAAAAGTTTGGAACTTTGGTACCCTTTGAAGAATCTGCTTCAATTGGGTTCCTTGTTTACCCTGTGAGGGGAACAGAGAAGCGCTTTGACGTGTGGGTGATGAAGGATTATTGGGACGAAGGGTCTTGGGTGAAGCAATACAGCGTTGGACCCGTGCAAGTGATTTACAAGCTTGTGGGGTTTTATGGGACTAATCGATTTTTCTGGAAGGACAGCAACGAAAGATTGGTTCTTTATGATTCGGAGAACACAAGGGATCTTCAGGTTTATGGAAAGCATGATTCTATAAGGGCTGCTAAGTACACAGAAAGTCTTGTTTCGCTTCATAGGGGAAATGAGTTTAGTCACAAGTGTTTTTCGTGTAGTTTGGTTCCAGACCCTCTGCTACATGATACTGAATATCTTGTTTCATTTTAA
Predicted protein sequences of Glyma19g23910
>Glyma19g23910.1   sequence type=predicted peptide   gene model=Glyma19g23910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMEHLPRELVSNVLSRLPAKVLLLCKCVCNSWFDLITDPHFVSNYYVVYNSLQSQEEHLLVIRRPFFSGLKTYISVLSWNTNDPKKHVSSDVLNPPYEYNSDHKYWTEILGPCNGIYFLEGNPNVLMNPSLREFKVLPESHFTSPHGTYTFTDYAGFGFDPKTNDYKVVVLKDLWFKETDERQLGYWSAELYSLNSNSWRKLDPSLLPLPIEIWGSSRVFTYANNCCHWWGFVEESDATQDVVLAFDMVKESFRKIRVPKIRDSSDEKFGTLVPFEESASIGFLVYPVRGTEKRFDVWVMKDYWDEGSWVKQYSVGPVQVIYKLVGFYGTNRFFWKDSNERLVLYDSENTRDLQVYGKHDSIRAAKYTESLVSLHRGNEFSHKCFSCSLVPDPLLHDTEYLVSF*






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