SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40660 | AT | Annotation by Michelle Graham. TAIR10: ATP12 protein-related | chr5:16283650-16285161 REVERSE LENGTH=325 | SoyBase | E_val: 2.00E-124 | ISS |
| GO:0043461 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proton-transporting ATP synthase complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| KOG3015 | KOG | F1-ATP synthase assembly protein | JGI | ISS | |
| PTHR21013 | Panther | ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR | JGI | ISS | |
| PF07542 | PFAM | ATP12 chaperone protein | JGI | ISS | |
| UniRef100_B9SLS3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase mitochondrial F1 complex assembly factor 2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SLS3_RICCO | SoyBase | E_val: 8.00E-134 | ISS |
| UniRef100_UPI000233EBE0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EBE0 related cluster n=1 Tax=unknown RepID=UPI000233EBE0 | SoyBase | E_val: 7.00E-158 | ISS |
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Glyma19g23591 not represented in the dataset |
Glyma19g23591 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g07140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g080700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g23591.1 sequence type=CDS gene model=Glyma19g23591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGTCGTCGTCCTCGATGGTGACAATGTCGATGTCGTTCATGACGGGGTTGATCGTGGGGAAGAGGTTCTACAAAGAGTTGAAGACTCAAGAAGCTGACGACGGGAACGGGTGGACGGTGATGCTCGATTACAGAACCCTGAAGACTCCTTCCAAGAGACCCTTCAAGCTTCCCTCTCTTCCTCTTGCCAAAGCCATTGCTGCTAAATGGGAATATCAGCAAACGGATGGCATAAGGCCCTTCACAATGCCTCTTATGGGACTTGCTTGCACGGCCTTGGAAAGAGTTCCACTCACAAGGAGCAAAGTTATTGAGAATTTGATGAAGAAATTTAATCAAGATTTAGTATTTTGTCGTGCACCTGATGACAATGAGCGGCTATATCGCCAGGTGGAGAAAATTGATCCATTGCTTCGTTGGGTGGAGTCAGAATTTGGCTTTAAGCCAGTTGTTTACTCCAGCTTTTTTGGTGAAAAGCAGGAAGATGGTCTTCTAACGGCTATTGAGAACCTTCTAAAGAAAACAGATGATTGTGAATTGGCAGCAATTGATGCTATTGCAGCATCAGCACATTCGTTAACTTTAGCTATTGGAATGGTGCAGGGGAAATTGCAAATTGAGGAAGCAATTGAACTTATTAGACTTGAAGAGGATTTCTCAGGTACATACTTACATGACTATCACTATAATCATAACCTGATTCATAATCTTCTCTCTATAATGTGCTTAAATATTGAAGTGAACAGGTGGGGCCTCGTAGAAGGTGGTCATGATGTGGATATTGCTGATCTAAGGGTGCAGGTTTCATCAGCAATTGTATTTCTTGGTTTGTCAAGATGCATATAG
>Glyma19g23591.1 sequence type=predicted peptide gene model=Glyma19g23591 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LSSSSMVTMSMSFMTGLIVGKRFYKELKTQEADDGNGWTVMLDYRTLKTPSKRPFKLPSLPLAKAIAAKWEYQQTDGIRPFTMPLMGLACTALERVPLTRSKVIENLMKKFNQDLVFCRAPDDNERLYRQVEKIDPLLRWVESEFGFKPVVYSSFFGEKQEDGLLTAIENLLKKTDDCELAAIDAIAASAHSLTLAIGMVQGKLQIEEAIELIRLEEDFSGTYLHDYHYNHNLIHNLLSIMCLNIEVNRWGLVEGGHDVDIADLRVQVSSAIVFLGLSRCI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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