SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g23570

Feature Type:gene_model
Chromosome:Gm19
Start:28938313
stop:28941738
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g23570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40650AT Annotation by Michelle Graham. TAIR10: succinate dehydrogenase 2-2 | chr5:16281462-16283296 FORWARD LENGTH=280 SoyBaseE_val: 9.00E-162ISS
GO:0006099GO-bp Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle SoyBaseN/AISS
GO:0006121GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, succinate to ubiquinone SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005749GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex II SoyBaseN/AISS
GO:0045281GO-cc Annotation by Michelle Graham. GO Cellular Compartment: succinate dehydrogenase complex SoyBaseN/AISS
GO:0000104GO-mf Annotation by Michelle Graham. GO Molecular Function: succinate dehydrogenase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0051536GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding SoyBaseN/AISS
GO:0051537GO-mf Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding SoyBaseN/AISS
KOG3049 KOG Succinate dehydrogenase, Fe-S protein subunit JGI ISS
PTHR11921Panther SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN JGI ISS
UniRef100_E5GCD7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Succinate dehydrogenase n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD7_CUCME SoyBaseE_val: 3.00E-172ISS
UniRef100_UPI000189D21CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D21C related cluster n=1 Tax=unknown RepID=UPI000189D21C SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g23570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g23570
ParalogEvidenceComments
Glyma16g07150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g23570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g080600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g23570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g23570
>Glyma19g23570.1   sequence type=CDS   gene model=Glyma19g23570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACAGGGTTACTGAAGAGGGCGGCGCAGAGGCTCCCCTCCTCGCCGGGGTTCAAGCTGGCCCTCCTCCGGGCCCACGCGTCGGAGGCCCAGGCCCAGCAGGTGGAGCCCAAGGCCCGCGGCACCCCGACCCTCAAAACCTTCCAAATCTACCGCTGGAGCCCGGAGAACCCCTCAAAGCCCGAGCTCAAGGACTACCAGATCAACCTAAAGGAGTGCGGGCCCATGGTCCTGGACGCGCTCATCAAGATCAAGAACGAGATCGACCCGAGCCTCACGTTCCGCCGCTCGTGCCGCGAGGGGATCTGCGGCTCCTGCGCCATGAACATCGACGGTTGCAACGGCCTCGCGTGCCTCACCAAGATCCCCTCCGAAGGCGCCGCCACCACGATCACCCCTCTGCCACACATGTTCGTGATCAAGGACCTCGTCGTCGACATGACGAACTTCTACAATCAGTACAAGAGTATCGAGCCGTGGCTCAAGAGGAAGAACCCACCGGAGCCGGGGAAGGAGATTCTACAGAGCAAGAAGGAGAGGGAGAAACTCGATGGGATGTACGAGTGCATACTGTGCGCCTGCTGTAGCACGTCCTGCCCCAGCTACTGGTGGAACCCCGAGTCCTACCTCGGTCCCGCCGCGTTGCTCCACGCTAATAGGTGGATAAGTGACAGTCGTGATGAGTACACTAAGGAGAGATTGGATGCCATTAATGATGAATTCAAGCTCTATCGCTGCCACACCATATTGAACTGTGCTCGAGCCTGCCCAAAGGGGTTAAACCCAGGAAAGCAAATCTCACATATCAAGTCACTTCAGCCTAAAGCATAA
Predicted protein sequences of Glyma19g23570
>Glyma19g23570.1   sequence type=predicted peptide   gene model=Glyma19g23570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGLLKRAAQRLPSSPGFKLALLRAHASEAQAQQVEPKARGTPTLKTFQIYRWSPENPSKPELKDYQINLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSEGAATTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPEPGKEILQSKKEREKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAINDEFKLYRCHTILNCARACPKGLNPGKQISHIKSLQPKA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo