Glyma19g23550 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g23550

Feature Type:	gene_model
Chromosome:	Gm19
Start:	28893056
stop:	28902466
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g23550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40640	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27390.1); Has 104 Blast hits to 102 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr5:16277345-16280258 FORWARD LENGTH=586	SoyBase	E_val: 0	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_Q2HU72	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=Q2HU72_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F2EE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F2EE related cluster n=1 Tax=unknown RepID=UPI000233F2EE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g23550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g23550

Paralog	Evidence	Comments
Glyma16g07170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g23550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g080400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g23550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g23550

Limit To All Plant Sequences

>Glyma19g23550.2   sequence type=transcript   gene model=Glyma19g23550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAACATTAACACTACGCATACAGCAGAGACAGAAACCAAGGACTTGCTTTTGCTTTAGCCTAACCAAAAAAGGAAAAAATAAATAATTTGTACACACTATCTTTAGTAATAGAAGCAAGGGAAAGGGAAAGGTGGAAATGAATCGGAATATGAGGATTTGACTAAGTATATTTATGTGACACTGATTCTTTTTGTGATATAAATTGCTTCATTCATATTCCTCTGATTTTTAAGACTTCAGATTTTCAACAGTGCCAGAAAGGTCGCATTCCCCTTGTACCCTCGTCGACAAAGTTGATTTTTTTTACTGTGATTGAGTTGGAGAAACCAACAAAATGGGGGTTCAGGAAGATCCACTTGTTTCTGTGGCCACTATCAGAAGCATAGTAAAGGGCAAGTTTGAGTCTTCATGGATGTTTATCGCTATGTGCTGCTAGAAAATTCGGTTTTTGGCTTCTGGGTATTTGGTTGAAACCTTTCTTATGTGCTGAGTAAAGGTTAAAGGGGGCAAAGATTGGATCTTTTCTACTTGAGGGTGGTGAGTGGGGAACTGAAAGTGTGAGTTTGTAGTGTTCTTTTGCAGAAATCTGAGTGAATGGAGCCTCCTACGGGGTTTTGTGCTTCTTTGTTGAGTTTCATCCGGTTTCTTCCTTTTTTCATTGGGCTTCTGCTTCTTGGCACCATCAAAGGTATCCTTTTCTGCCCTTTGATATGCTTAATAATTGCAACTGGGAACACTGCTATCATACTTGGACTTTGGATAGTGCATTCTGTTTGGACATATTACTGCGTTGTAAGAGCTAAACAATTTGGGCCTATTCTGAAGCTTGTTATTGGCCTATGTGTACTACCAGTGCTGTTGGTTGTGTATCCGATTGTTGGTATTCTTGGAAGTATTGTTGGTGGAGCAGCCTATGGATTTCTTTCACCCATATTTGCTACTTTAGAAGCTGTAGAGGAAGGAAAAGATGTCAAATTTTACCACTGTTTCATTGATGGTACATGGAGCACTGTTGAAAAGAGCTGCATGGTTGTCAGGGATGTAAAAGATGTTTGTTTCCATTCATACTTCTCGGTTATGGATGACCTGCGACAAAAAGGACCTCCAGATGCAAAATACTATGAGATCAGGCTACTTTATATTCCTGGTGCTTTAATAGCTTCAGTTATTGGAATCATTGTCGATGTGCCAGTTATATCATTTGTTGCCCTATGCAAGGGTCCATACATGCTATTTAAGGGGTGGCATCGATTGTTTCATGACCTTATTGGCCGTGAAGGCCCTTTCCTGGAGACCATATGTGTACCTTTTGCGGGTCTTGCTATCCTTTTGTGGCCATTGGCTGTTGCTGGGGCAATTTTGGCATCCATGTTAGCAAGTTTCTTTCTTGGTGCCTATGCAGGCGTTGTTGCTTATCAGGAGTCTTCCTTCTTGTTTGGCCTTTCATACGTTATTGCAGCTTCGGCCATTTATGATGAATACAGCAATGATATTCTTGACATGCCGGAAGGATCCTGCTTCCCTAGGCCCCAGTTTCGAAAAGATGTTGATGCATCGCAAAGAACTTCTAATTCAAATTCCGTTTCAAGACCCAGCTCCTTCCGAAAGGCTCCTTCTCGCACATCTTCAATGAAGAACAACAATATTGCTGAGTTGAAATCATTTGAGCTGTTGGATGCCTTATTCAAGGAATGTTTCCATGTTGGAGAAAAAATGGTTTCTGAAGGTATAATTACAAGAGAAGACATAGAAGAAGCCAAATCTGGTAATGGGAGTAGAGTCATTAGTATTGGTTTGCCAGCATATTGCTTAGTCCAGGGACTCTTGCGCTCTGCAAAATTAAATTCCGTTGGTATAATGATTAGTGATGAAACTGAACTAACTATCACAAACAGACCAAGGGAGACATTTTTTGACTGGTTCGTTAATCCCCTTTTGATCATTAAGGAGCAAATCAAAGCTGAAAATCTTTCTGCCTCAGAAGAGGACTACCTCTGCAAATTAGTTCTCTTGGGTGGTGATGCAGAGAGACTGAAAAAGTCTAGCGTTGGCCCTGCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAGACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACGCTTCAACGATCTTGTAAGATCGTTATCTGATGATCTGAAGGAGAAAAGTGGAGGTCCAATAATGACCAGATCAAAGAGTGCCTTTGCTCGGTTGATTAGTTTAAAATCATTCAAGGGGACAAGAGCTAACGGATCTGCTCAAGGGTCACAACATGTTGCAAGAGACTTAGAAAATTCATGATGAGAATACCATGTAATTGACAAATCTTATGTCATAGGTTTATTTTCCAGTCCATTTTGGATAGAAAATTGAAGTGTAATTGACAATAATAGTAAGAGTTTAATTTCAATGTATTATCAGTGTAAATTTTTTGTACTGTTAACCAATTAGAAATTATAATTGGTACGACATTTATTGTAAAAATAAAATAAAATAAAAAAATATCATACAATTTGATTAGATGAGAGC

Coding sequences of Glyma19g23550

Limit To All Plant Sequences

>Glyma19g23550.1   sequence type=CDS   gene model=Glyma19g23550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCTCCTACGGGGTTTTGTGCTTCTTTGTTGAGTTTCATCCGGTTTCTTCCTTTTTTCATTGGGCTTCTGCTTCTTGGCACCATCAAAGTGCTGTTGGTTGTGTATCCGATTGTTGGTATTCTTGGAAGTATTGTTGGTGGAGCAGCCTATGGATTTCTTTCACCCATATTTGCTACTTTAGAAGCTGTAGAGGAAGGAAAAGATGTCAAATTTTACCACTGTTTCATTGATGGTACATGGAGCACTGTTGAAAAGAGCTGCATGGTTGTCAGGGATGTAAAAGATGTTTGTTTCCATTCATACTTCTCGGTTATGGATGACCTGCGACAAAAAGGACCTCCAGATGCAAAATACTATGAGATCAGGCTACTTTATATTCCTGGTGCTTTAATAGCTTCAGTTATTGGAATCATTGTCGATGTGCCAGTTATATCATTTGTTGCCCTATGCAAGGGTCCATACATGCTATTTAAGGGGTGGCATCGATTGTTTCATGACCTTATTGGCCGTGAAGGCCCTTTCCTGGAGACCATATGTGTACCTTTTGCGGGTCTTGCTATCCTTTTGTGGCCATTGGCTGTTGCTGGGGCAATTTTGGCATCCATGTTAGCAAGTTTCTTTCTTGGTGCCTATGCAGGCGTTGTTGCTTATCAGGAGTCTTCCTTCTTGTTTGGCCTTTCATACGTTATTGCAGCTTCGGCCATTTATGATGAATACAGCAATGATATTCTTGACATGCCGGAAGGATCCTGCTTCCCTAGGCCCCAGTTTCGAAAAGATGTTGATGCATCGCAAAGAACTTCTAATTCAAATTCCGTTTCAAGACCCAGCTCCTTCCGAAAGGCTCCTTCTCGCACATCTTCAATGAAGAACAACAATATTGCTGAGTTGAAATCATTTGAGCTGTTGGATGCCTTATTCAAGGAATGTTTCCATGTTGGAGAAAAAATGGTTTCTGAAGGTATAATTACAAGAGAAGACATAGAAGAAGCCAAATCTGGTAATGGGAGTAGAGTCATTAGTATTGGTTTGCCAGCATATTGCTTAGTCCAGGGACTCTTGCGCTCTGCAAAATTAAATTCCGTTGGTATAATGATTAGTGATGAAACTGAACTAACTATCACAAACAGACCAAGGGAGACATTTTTTGACTGGTTCGTTAATCCCCTTTTGATCATTAAGGAGCAAATCAAAGCTGAAAATCTTTCTGCCTCAGAAGAGGACTACCTCTGCAAATTAGTTCTCTTGGGTGGTGATGCAGAGAGACTGAAAAAGTCTAGCGTTGGCCCTGCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAGACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACGCTTCAACGATCTTGTAAGATCGTTATCTGATGATCTGAAGGAGAAAAGTGGAGGTCCAATAATGACCAGATCAAAGAGTGCCTTTGCTCGGTTGATTAGTTTAAAATCATTCAAGGGGACAAGAGCTAACGGATCTGCTCAAGGGTCACAACATGTTGCAAGAGACTTAGAAAATTCATGA

>Glyma19g23550.2   sequence type=CDS   gene model=Glyma19g23550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCCTCCTACGGGGTTTTGTGCTTCTTTGTTGAGTTTCATCCGGTTTCTTCCTTTTTTCATTGGGCTTCTGCTTCTTGGCACCATCAAAGGTATCCTTTTCTGCCCTTTGATATGCTTAATAATTGCAACTGGGAACACTGCTATCATACTTGGACTTTGGATAGTGCATTCTGTTTGGACATATTACTGCGTTGTAAGAGCTAAACAATTTGGGCCTATTCTGAAGCTTGTTATTGGCCTATGTGTACTACCAGTGCTGTTGGTTGTGTATCCGATTGTTGGTATTCTTGGAAGTATTGTTGGTGGAGCAGCCTATGGATTTCTTTCACCCATATTTGCTACTTTAGAAGCTGTAGAGGAAGGAAAAGATGTCAAATTTTACCACTGTTTCATTGATGGTACATGGAGCACTGTTGAAAAGAGCTGCATGGTTGTCAGGGATGTAAAAGATGTTTGTTTCCATTCATACTTCTCGGTTATGGATGACCTGCGACAAAAAGGACCTCCAGATGCAAAATACTATGAGATCAGGCTACTTTATATTCCTGGTGCTTTAATAGCTTCAGTTATTGGAATCATTGTCGATGTGCCAGTTATATCATTTGTTGCCCTATGCAAGGGTCCATACATGCTATTTAAGGGGTGGCATCGATTGTTTCATGACCTTATTGGCCGTGAAGGCCCTTTCCTGGAGACCATATGTGTACCTTTTGCGGGTCTTGCTATCCTTTTGTGGCCATTGGCTGTTGCTGGGGCAATTTTGGCATCCATGTTAGCAAGTTTCTTTCTTGGTGCCTATGCAGGCGTTGTTGCTTATCAGGAGTCTTCCTTCTTGTTTGGCCTTTCATACGTTATTGCAGCTTCGGCCATTTATGATGAATACAGCAATGATATTCTTGACATGCCGGAAGGATCCTGCTTCCCTAGGCCCCAGTTTCGAAAAGATGTTGATGCATCGCAAAGAACTTCTAATTCAAATTCCGTTTCAAGACCCAGCTCCTTCCGAAAGGCTCCTTCTCGCACATCTTCAATGAAGAACAACAATATTGCTGAGTTGAAATCATTTGAGCTGTTGGATGCCTTATTCAAGGAATGTTTCCATGTTGGAGAAAAAATGGTTTCTGAAGGTATAATTACAAGAGAAGACATAGAAGAAGCCAAATCTGGTAATGGGAGTAGAGTCATTAGTATTGGTTTGCCAGCATATTGCTTAGTCCAGGGACTCTTGCGCTCTGCAAAATTAAATTCCGTTGGTATAATGATTAGTGATGAAACTGAACTAACTATCACAAACAGACCAAGGGAGACATTTTTTGACTGGTTCGTTAATCCCCTTTTGATCATTAAGGAGCAAATCAAAGCTGAAAATCTTTCTGCCTCAGAAGAGGACTACCTCTGCAAATTAGTTCTCTTGGGTGGTGATGCAGAGAGACTGAAAAAGTCTAGCGTTGGCCCTGCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAGACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACGCTTCAACGATCTTGTAAGATCGTTATCTGATGATCTGAAGGAGAAAAGTGGAGGTCCAATAATGACCAGATCAAAGAGTGCCTTTGCTCGGTTGATTAGTTTAAAATCATTCAAGGGGACAAGAGCTAACGGATCTGCTCAAGGGTCACAACATGTTGCAAGAGACTTAGAAAATTCATGA

Predicted protein sequences of Glyma19g23550

Limit To All Plant Sequences

>Glyma19g23550.1   sequence type=predicted peptide   gene model=Glyma19g23550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPPTGFCASLLSFIRFLPFFIGLLLLGTIKVLLVVYPIVGILGSIVGGAAYGFLSPIFATLEAVEEGKDVKFYHCFIDGTWSTVEKSCMVVRDVKDVCFHSYFSVMDDLRQKGPPDAKYYEIRLLYIPGALIASVIGIIVDVPVISFVALCKGPYMLFKGWHRLFHDLIGREGPFLETICVPFAGLAILLWPLAVAGAILASMLASFFLGAYAGVVAYQESSFLFGLSYVIAASAIYDEYSNDILDMPEGSCFPRPQFRKDVDASQRTSNSNSVSRPSSFRKAPSRTSSMKNNNIAELKSFELLDALFKECFHVGEKMVSEGIITREDIEEAKSGNGSRVISIGLPAYCLVQGLLRSAKLNSVGIMISDETELTITNRPRETFFDWFVNPLLIIKEQIKAENLSASEEDYLCKLVLLGGDAERLKKSSVGPAPESDVKRAELEALARRLQGITKSMSRFPTFKRRFNDLVRSLSDDLKEKSGGPIMTRSKSAFARLISLKSFKGTRANGSAQGSQHVARDLENS*

>Glyma19g23550.2   sequence type=predicted peptide   gene model=Glyma19g23550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPPTGFCASLLSFIRFLPFFIGLLLLGTIKGILFCPLICLIIATGNTAIILGLWIVHSVWTYYCVVRAKQFGPILKLVIGLCVLPVLLVVYPIVGILGSIVGGAAYGFLSPIFATLEAVEEGKDVKFYHCFIDGTWSTVEKSCMVVRDVKDVCFHSYFSVMDDLRQKGPPDAKYYEIRLLYIPGALIASVIGIIVDVPVISFVALCKGPYMLFKGWHRLFHDLIGREGPFLETICVPFAGLAILLWPLAVAGAILASMLASFFLGAYAGVVAYQESSFLFGLSYVIAASAIYDEYSNDILDMPEGSCFPRPQFRKDVDASQRTSNSNSVSRPSSFRKAPSRTSSMKNNNIAELKSFELLDALFKECFHVGEKMVSEGIITREDIEEAKSGNGSRVISIGLPAYCLVQGLLRSAKLNSVGIMISDETELTITNRPRETFFDWFVNPLLIIKEQIKAENLSASEEDYLCKLVLLGGDAERLKKSSVGPAPESDVKRAELEALARRLQGITKSMSRFPTFKRRFNDLVRSLSDDLKEKSGGPIMTRSKSAFARLISLKSFKGTRANGSAQGSQHVARDLENS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain