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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40610 | AT | Annotation by Michelle Graham. TAIR10: NAD-dependent glycerol-3-phosphate dehydrogenase family protein | chr5:16265071-16267258 REVERSE LENGTH=400 | SoyBase | E_val: 0 | ISS |
| GO:0006072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate metabolic process | SoyBase | N/A | ISS |
| GO:0046167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009331 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: glycerol-3-phosphate dehydrogenase complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004367 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG2711 | KOG | Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase | JGI | ISS | |
| PTHR11728 | Panther | GLYCEROL-3-PHOSPHATE DEHYDROGENASE | JGI | ISS | |
| PF01210 | PFAM | NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | JGI | ISS | |
| PF07479 | PFAM | NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus | JGI | ISS | |
| UniRef100_G7L5E8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7L5E8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EBDA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EBDA related cluster n=1 Tax=unknown RepID=UPI000233EBDA | SoyBase | E_val: 0 | ISS |
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Glyma19g23190 not represented in the dataset |
Glyma19g23190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g079400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g23190.2 sequence type=transcript gene model=Glyma19g23190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAATTTTATGCATTTTGTGCATGTCTTTTCTCTTCTTCCTTCAGCGTCTTCTCGATCTTCTGTGCCACCCTTCGCACTTCTCTCTTGTTTTCCAGCCCTTTGCATTTATCCAAATTAAACAGCGTCAAGATGTTTAAAGTCACCGTTGTTGGTAGCGGCAATTGGGGCAGTGTTGCGGCAAAGCTTATTGCCTCGAACACCATCAGGCTTGCCTCCTTCCATGATGAAGTGAGAATGTGGGTATTCGAGGAAAAATTACCAAGTGGGGAGAAGCTCACAGATGTTATCAACAAAACCAATGAAAATGTCAAGTATCTCCCTGGAATCAAGCTTGGTAAAAACGTAGTTGCTGATCCAGAGCTTGAAAATGCAGTTAAGGATGCCAACATGCTAGTATTTGTAACTCCGCATCAATTCATGGAAGGAATATGCAAGAGGCTTGCAGGGAAAATAAGGTCAGATACAGAGGGAATTTCTCTTATCAAAGGGATGGAGGTCAAGAAGGAAGGCCCAACCATGATCTCTACTCTCATTACCAAACAACTAGGAATCAATTGTTCTGTTTTAATGGGGGCCAACATAGCAAATGAGATAGCATTGGAGAAATTTAGTGAAGCAACAGTTGGATATAATCAAAACAAATTAGCAGCAGAGAGATGGGTTGAGTTGTTCAATACTCCTTATTTCAATGTGACAGCCGTCGAAGATGTTGAAGGGGTCGAACTCTGTGGAACTCTGAAAAATGTAGTGGCCATAGCTGCAGGTTTTGTTGATGGCTTGGAGATGGGAAATAATACAAAAGCTGCAATCATGAGAATTGGCCTGAAAGAGATGAGGGCATTTTCAAAGATGTGGTTTCCATCTGTTAAGGACAACACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCATGGGTGGGAGAAATAGGAAAGTTGCCGATGCTTATGCCAGAAATGGAGGGAAGAGGCCTTTTGATGAGCTTGAAGCAGAGATGCTTCAAGGACAGAAATTGCAGGGTGTCTTAACTGCACAAGAGGTTCATGAGGTTCTAAGTCATCGTGGGTGGCTACACATGTTTCCTCTCTTCTCAGCTGTGCATGCAATCAGCACAGGTCGCCTTCCACCATCAGCCATAGTTAAAATCAGCGACCTAAAGCCCAGGCATGGACAATTACAAAGCATGCTTTAGATGCATTTACAAGGATAGAAGGTCAGCACATACTCAGAAGGTTCTCTTAGGAAGCTAACTCTTATTCAAAGTTCATGTCAATTGTTGTACCTTTTCCACTCCATGTAACACATGCAACAGGCTGAAGAAATACTTCAAACAAGAGATTTGAATCTATCTACTGATTGAAGTTTCCAATTTTGAGAATGTATTAAATGATCGGTTTGTTTTAATCCCCTATATGGAGCAATTGCTTCCAATATTAGTATACACATCTATTTATAAT
>Glyma19g23190.1 sequence type=CDS gene model=Glyma19g23190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAAAGTCACCGTTGTTGGTAGCGGCAATTGGGGCAGTGTTGCGGCAAAGCTTATTGCCTCGAACACCATCAGGCTTGCCTCCTTCCATGATGAAGTGAGAATGTGGGTATTCGAGGAAAAATTACCAAGTGGGGAGAAGCTCACAGATGTTATCAACAAAACCAATGAAAATGTCAAGTATCTCCCTGGAATCAAGCTTGGTAAAAACGTAGTTGCTGATCCAGAGCTTGAAAATGCAGTTAAGGATGCCAACATGCTAGTATTTGTAACTCCGCATCAATTCATGGAAGGAATATGCAAGAGGCTTGCAGGGAAAATAAGGTCAGATACAGAGGGAATTTCTCTTATCAAAGGGATGGAGGTCAAGAAGGAAGGCCCAACCATGATCTCTACTCTCATTACCAAACAACTAGGAATCAATTGTTCTGTTTTAATGGGGGCCAACATAGCAAATGAGATAGCATTGGAGAAATTTAGTGAAGCAACAGTTGGATATAATCAAAACAAATTAGCAGCAGAGAGATGGGTTGAGTTGTTCAATACTCCTTATTTCAATGTGACAGCCGTCGAAGATGTTGAAGGGGTCGAACTCTGTGGAACTCTGAAAAATGTAGTGGCCATAGCTGCAGGTTTTGTTGATGGCTTGGAGATGGGAAATAATACAAAAGCTGCAATCATGAGAATTGGCCTGAAAGAGATGAGGGCATTTTCAAAGATGTGGTTTCCATCTGTTAAGGACAACACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCATGGGTGGGAGAAATAGGAAAGTTGCCGATGCTTATGCCAGAAATGGAGGGAAGAGGCCTTTTGATGAGCTTGAAGCAGAGATGCTTCAAGGACAGAAATTGCAGGGTGTCTTAACTGCACAAGAGGTTCATGAGGTTCTAAGTCATCGTGGGTGGCTACACATGTTTCCTCTCTTCTCAGCTGTGCATGCAATCAGCACAGGTCGCCTTCCACCATCAGCCATAGTTAAAATCAGCGACCTAAAGCCCAGCTCTAATTTGTAG >Glyma19g23190.2 sequence type=CDS gene model=Glyma19g23190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAAAGTCACCGTTGTTGGTAGCGGCAATTGGGGCAGTGTTGCGGCAAAGCTTATTGCCTCGAACACCATCAGGCTTGCCTCCTTCCATGATGAAGTGAGAATGTGGGTATTCGAGGAAAAATTACCAAGTGGGGAGAAGCTCACAGATGTTATCAACAAAACCAATGAAAATGTCAAGTATCTCCCTGGAATCAAGCTTGGTAAAAACGTAGTTGCTGATCCAGAGCTTGAAAATGCAGTTAAGGATGCCAACATGCTAGTATTTGTAACTCCGCATCAATTCATGGAAGGAATATGCAAGAGGCTTGCAGGGAAAATAAGGTCAGATACAGAGGGAATTTCTCTTATCAAAGGGATGGAGGTCAAGAAGGAAGGCCCAACCATGATCTCTACTCTCATTACCAAACAACTAGGAATCAATTGTTCTGTTTTAATGGGGGCCAACATAGCAAATGAGATAGCATTGGAGAAATTTAGTGAAGCAACAGTTGGATATAATCAAAACAAATTAGCAGCAGAGAGATGGGTTGAGTTGTTCAATACTCCTTATTTCAATGTGACAGCCGTCGAAGATGTTGAAGGGGTCGAACTCTGTGGAACTCTGAAAAATGTAGTGGCCATAGCTGCAGGTTTTGTTGATGGCTTGGAGATGGGAAATAATACAAAAGCTGCAATCATGAGAATTGGCCTGAAAGAGATGAGGGCATTTTCAAAGATGTGGTTTCCATCTGTTAAGGACAACACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCATGGGTGGGAGAAATAGGAAAGTTGCCGATGCTTATGCCAGAAATGGAGGGAAGAGGCCTTTTGATGAGCTTGAAGCAGAGATGCTTCAAGGACAGAAATTGCAGGGTGTCTTAACTGCACAAGAGGTTCATGAGGTTCTAAGTCATCGTGGGTGGCTACACATGTTTCCTCTCTTCTCAGCTGTGCATGCAATCAGCACAGGTCGCCTTCCACCATCAGCCATAGTTAAAATCAGCGACCTAAAGCCCAGGCATGGACAATTACAAAGCATGCTTTAG
>Glyma19g23190.1 sequence type=predicted peptide gene model=Glyma19g23190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFKVTVVGSGNWGSVAAKLIASNTIRLASFHDEVRMWVFEEKLPSGEKLTDVINKTNENVKYLPGIKLGKNVVADPELENAVKDANMLVFVTPHQFMEGICKRLAGKIRSDTEGISLIKGMEVKKEGPTMISTLITKQLGINCSVLMGANIANEIALEKFSEATVGYNQNKLAAERWVELFNTPYFNVTAVEDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLKEMRAFSKMWFPSVKDNTFFESCGVADLITTCMGGRNRKVADAYARNGGKRPFDELEAEMLQGQKLQGVLTAQEVHEVLSHRGWLHMFPLFSAVHAISTGRLPPSAIVKISDLKPSSNL* >Glyma19g23190.2 sequence type=predicted peptide gene model=Glyma19g23190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFKVTVVGSGNWGSVAAKLIASNTIRLASFHDEVRMWVFEEKLPSGEKLTDVINKTNENVKYLPGIKLGKNVVADPELENAVKDANMLVFVTPHQFMEGICKRLAGKIRSDTEGISLIKGMEVKKEGPTMISTLITKQLGINCSVLMGANIANEIALEKFSEATVGYNQNKLAAERWVELFNTPYFNVTAVEDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLKEMRAFSKMWFPSVKDNTFFESCGVADLITTCMGGRNRKVADAYARNGGKRPFDELEAEMLQGQKLQGVLTAQEVHEVLSHRGWLHMFPLFSAVHAISTGRLPPSAIVKISDLKPRHGQLQSML*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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