Glyma19g22900 - SoyBase

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Report for Sequence Feature Glyma19g22900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	28254004
stop:	28256092
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g22900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01660	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:245532-246432 FORWARD LENGTH=273	SoyBase	E_val: 3.00E-121	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF291	Panther	METHYLTRANSFERASE	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_B9SLV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SLV0_RICCO	SoyBase	E_val: 5.00E-137	ISS
UniRef100_I1N7H2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7H2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g22900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g22900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g079000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g22900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g22900

Limit To All Plant Sequences

>Glyma19g22900.1   sequence type=CDS   gene model=Glyma19g22900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACCTATCTCAGCACCTCATGTCAGAACTTCAATCAAAATTGTTAGCACATTAAACGAAAGCTACCACACCAATCAACCACCCTTGGCAGGCAAAATAAAACGCCTTGTTCTCACCCAGGAAGGTAGAACAAAGCTCAACATTTACCCAGATAGAGAGTTCTATGCATTTCCACGCTTTGTAAAACATGTAGATGATGGTTTTGTTTCTACACTGACCAATCTTTACAGAGAGAGGTTGAGATCTGACATGGAGATTCTTGACCTCATGAGCTCCTGGGTTAGCCATCTACCAAGTGATGTCAAGTACAAAAAGGTGGTGGGGCATGGGTTGAATGGACAAGAGCTTTCAAAGAATCCAAGGTTGGATTTTTTTGTTGTGAAGGATCTCAACAAGGATCAACAGTTTGAATTTGAGAGTTGCAGTTTTGATGCAGTGTTATGCACAGTTAGCGTGCAGTATCTCCAACAACCAGAGAAGGTATTTGAAGAGGTGTTCCGGGTACTAAAGCCAGGAGGGGCATTCATTGTGAGTTTTAGCAACAGAATGTTCTATGAGAAAGCCATAAGTGCATGGAGGGAAGGGACTGCTTATAGTAGGGTACAACTTGTGGTTCAGTACTTCCAATCCGTGGAAGGTTTCACAGAGCCAGAGGTAGTTCGAAAGCTGCCAAATGCTCAAGAGAACAACATGTCACCAATTGGTTGGATCATGAGGCTTTTTGGATTGCTTTCAGGGTCAGATCCCTTCTATGCAGTGATTGCTTACAGGAATTATAAGCCCATACATGATGCCTGA

Predicted protein sequences of Glyma19g22900

Limit To All Plant Sequences

>Glyma19g22900.1   sequence type=predicted peptide   gene model=Glyma19g22900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQPISAPHVRTSIKIVSTLNESYHTNQPPLAGKIKRLVLTQEGRTKLNIYPDREFYAFPRFVKHVDDGFVSTLTNLYRERLRSDMEILDLMSSWVSHLPSDVKYKKVVGHGLNGQELSKNPRLDFFVVKDLNKDQQFEFESCSFDAVLCTVSVQYLQQPEKVFEEVFRVLKPGGAFIVSFSNRMFYEKAISAWREGTAYSRVQLVVQYFQSVEGFTEPEVVRKLPNAQENNMSPIGWIMRLFGLLSGSDPFYAVIAYRNYKPIHDA*

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