Glyma19g22800 - SoyBase

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Report for Sequence Feature Glyma19g22800

Feature Type:	gene_model
Chromosome:	Gm19
Start:	28003515
stop:	28009985
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g22800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01650	AT	Annotation by Michelle Graham. TAIR10: RING domain ligase1 \| chr3:242734-245062 FORWARD LENGTH=489	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009690	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process	SoyBase	N/A	ISS
GO:0009850	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin metabolic process	SoyBase	N/A	ISS
GO:0080148	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of response to water deprivation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR10857	Panther	COPINE	JGI		ISS
PF07002	PFAM	Copine	JGI		ISS
UniRef100_G7L6A8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RGLG2 n=1 Tax=Medicago truncatula RepID=G7L6A8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N7G9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N7G9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g22800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g22800

Paralog	Evidence	Comments
Glyma16g07400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g22800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g078600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g22800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g22800

Limit To All Plant Sequences

>Glyma19g22800.3   sequence type=transcript   gene model=Glyma19g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCGAACATGACCGTTTTAAGTTTGAGTTCCAATACAAAACGCGAAACTTCCATGCTATTGCTTCTCCAACACTCCCACAAAAGCCTTCAAAAAGGAAGAACAAAAAAGACCCTTCTCTGTTGCTCCCCTACCCTGCACACCTTTTCATAGTTTTCAAAAAAATTCCATATTCAAATCTCAATTATTGCTCTCATTTTGCGTATACACCATTCAAGATTCTCAGCCAGTGTTACTCCACGCACCATCCCTGAACACTCCAACATCATATCATATCATATCACGTTTTATTTACTCTTCATCTCAATCATCATAAGGTATCTTCAAGATTCAGATACATTTTTTTTGTTACATAAAGTTTAGGTGAGTTCGGTCTAGGGAAAGAGGAGAACATTCCTCAAGGTTATAAGAGAGCTTACAAAAATACTTAGATGTCGTCCACCAACAAAAAGGTTAGAACTCCCACAGTCGTTTCCACTTTAATTTTCTGCAAAACGCGAGCCGTTTCCACCTTTCCGCGCGTGAAACAGTAAACGCCGTTCAGTTTTAATTCCTTTTGTTGGTTATTCTGTTGACTATGAAGTACTTGAGGAATCTACGTTAGTCTCATCACGATCGTGTGTTCTTTTTTCTAGAAGTTGCTTGGAAAATGGAAACTGCAACCTCAAGGACGATACACTCATATCATTTTATATAGCATTTGGAAGAATTATTGGTTGTGTTCATTGCTTCATTTTTAATCGTCTTCGTATTTTTGGGTTTTCTGAGAAGTGCGTGTGTTGATGGGGGGTCAAAATTCTAAGGAGGAAAGTTGGAGGCAGAGTTCATCTGTCAGGTCTTCTTCTTCTTCTTGGAGTGCTTACTTGGATCCACTATCGAGTTATGGTTTCAATGAACCGCAACCATCATATTCTTCTTATGGCTATGAAGCTTATGGTGGCGATGGAATGGTACGCTATGATAGTACAAAGCTAGAGAGGAGGTACTCAAGAATTTCTGATCATTACAGTTCCATAGATCAGGTTAGTGAGGCTCTTGCACTTGCAGGCCTTGAGTCTTCTAATCTTATTGTTGGTGTTGATTTCACCAAGAGTAATGAGTGGACAGGCAAGAATTCATTCAATAGGCGAAGCTTGCATCACATTGGGAGAGGTCTGAACCCTTATGAGCAAGCAATATCAATTATTGGGAAAAGCTTGGCAGCATTCGATGAGGATAACTTGATCCCCTGCTTTGGATTTGGAGATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAACAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACCAAGTCCACAAGAACAGAAGACTGTGGATGCCATAGTTGCAGCTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACCGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACAAGGCAGCAATAGAGCTTAAGCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCAGATATAGTTCTCATGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCCACTTCTGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTGCAGGAGCCCCATAAATACAAGAATTAAGCTTTACTAATCGTATGTGGCTTGGGAATTGGTATTATTTTTTTTCTTATTTTTGTGTTGTGCCAGTCACAATTCTTTGGTTTTTTCTTGATTCGTTAAATTCATCAAAGGTTAGAAGTAGGTGTGGTTGGGTGCAACACTTGATCAGATGTATGTTTCCAGATATGAAACGGGGAATTCTCCATCAATTATTGTAGATATATTCATTTGATGAATTATATTTTTTCTTTTTTTTTCTTCCTATCATTGATTTTTTTCTTTTTTATTTAATGTAAAAG

Coding sequences of Glyma19g22800

Limit To All Plant Sequences

>Glyma19g22800.2   sequence type=CDS   gene model=Glyma19g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTCAAAATTCTAAGGAGGAAAGTTGGAGGCAGAGTTCATCTGTCAGGTCTTCTTCTTCTTCTTGGAGTGCTTACTTGGATCCACTATCGAGTTATGGTTTCAATGAACCGCAACCATCATATTCTTCTTATGGCTATGAAGCTTATGGTGGCGATGGAATGGTACGCTATGATAGTACAAAGCTAGAGAGGAGGTACTCAAGAATTTCTGATCATTACAGTTCCATAGATCAGGTTAGTGAGGCTCTTGCACTTGCAGGCCTTGAGTCTTCTAATCTTATTGTTGGTGTTGATTTCACCAAGAGTAATGAGTGGACAGGCAAGAATTCATTCAATAGGCGAAGCTTGCATCACATTGGGAGAGGTCTGAACCCTTATGAGCAAGCAATATCAATTATTGGGAAAAGCTTGGCAGCATTCGATGAGGATAACTTGATCCCCTGCTTTGGATTTGGAGATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAACAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACCAAGTCCACAAGAACAGAAGACTGTGGATGCCATAGTTGCAGCTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACCGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACAAGGCAGCAATAGAGCTTAAGCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCAGATATAGTTCTCATGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCCACTTCTGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTGCAGGAGCCCCATAAATACAAGAATTAAGCTTTACTAA

>Glyma19g22800.3   sequence type=CDS   gene model=Glyma19g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTCAAAATTCTAAGGAGGAAAGTTGGAGGCAGAGTTCATCTGTCAGGTCTTCTTCTTCTTCTTGGAGTGCTTACTTGGATCCACTATCGAGTTATGGTTTCAATGAACCGCAACCATCATATTCTTCTTATGGCTATGAAGCTTATGGTGGCGATGGAATGGTACGCTATGATAGTACAAAGCTAGAGAGGAGGTACTCAAGAATTTCTGATCATTACAGTTCCATAGATCAGGTTAGTGAGGCTCTTGCACTTGCAGGCCTTGAGTCTTCTAATCTTATTGTTGGTGTTGATTTCACCAAGAGTAATGAGTGGACAGGCAAGAATTCATTCAATAGGCGAAGCTTGCATCACATTGGGAGAGGTCTGAACCCTTATGAGCAAGCAATATCAATTATTGGGAAAAGCTTGGCAGCATTCGATGAGGATAACTTGATCCCCTGCTTTGGATTTGGAGATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAACAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACCAAGTCCACAAGAACAGAAGACTGTGGATGCCATAGTTGCAGCTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACCGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACAAGGCAGCAATAGAGCTTAAGCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCAGATATAGTTCTCATGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCCACTTCTGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTGCAGGAGCCCCATAAATACAAGAATTAAGCTTTACTAA

Predicted protein sequences of Glyma19g22800

Limit To All Plant Sequences

>Glyma19g22800.2   sequence type=predicted peptide   gene model=Glyma19g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGQNSKEESWRQSSSVRSSSSSWSAYLDPLSSYGFNEPQPSYSSYGYEAYGGDGMVRYDSTKLERRYSRISDHYSSIDQVSEALALAGLESSNLIVGVDFTKSNEWTGKNSFNRRSLHHIGRGLNPYEQAISIIGKSLAAFDEDNLIPCFGFGDASTHDQDVFSFYPSERFCDGFEDVLSRYREIVPHLRLAGPTSFAPIIEMAMSIVEQSGGQYHVLVIIADGQVTKNVDTKHGRPSPQEQKTVDAIVAASKFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKSIPPSRKEAAFALAALMEIPSQYKAAIELKLLGSRQANAPQRHALPPPRYSSHAARFEPSIPPQHGNSHPFATAPSAPSSTSDNQLCPICLSNAKDMAFGCGHQTCCECGQDLQSCPMCRSPINTRIKLY*

>Glyma19g22800.3   sequence type=predicted peptide   gene model=Glyma19g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGQNSKEESWRQSSSVRSSSSSWSAYLDPLSSYGFNEPQPSYSSYGYEAYGGDGMVRYDSTKLERRYSRISDHYSSIDQVSEALALAGLESSNLIVGVDFTKSNEWTGKNSFNRRSLHHIGRGLNPYEQAISIIGKSLAAFDEDNLIPCFGFGDASTHDQDVFSFYPSERFCDGFEDVLSRYREIVPHLRLAGPTSFAPIIEMAMSIVEQSGGQYHVLVIIADGQVTKNVDTKHGRPSPQEQKTVDAIVAASKFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKSIPPSRKEAAFALAALMEIPSQYKAAIELKLLGSRQANAPQRHALPPPRYSSHAARFEPSIPPQHGNSHPFATAPSAPSSTSDNQLCPICLSNAKDMAFGCGHQTCCECGQDLQSCPMCRSPINTRIKLY*

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