SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01650 | AT | Annotation by Michelle Graham. TAIR10: RING domain ligase1 | chr3:242734-245062 FORWARD LENGTH=489 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009690 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process | SoyBase | N/A | ISS |
| GO:0009850 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin metabolic process | SoyBase | N/A | ISS |
| GO:0080148 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of response to water deprivation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG4172 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR10857 | Panther | COPINE | JGI | ISS | |
| PF07002 | PFAM | Copine | JGI | ISS | |
| UniRef100_G7L6A8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RGLG2 n=1 Tax=Medicago truncatula RepID=G7L6A8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N7G9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N7G9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g22800 not represented in the dataset |
Glyma19g22800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g07400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g078600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g22800.3 sequence type=transcript gene model=Glyma19g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCGAACATGACCGTTTTAAGTTTGAGTTCCAATACAAAACGCGAAACTTCCATGCTATTGCTTCTCCAACACTCCCACAAAAGCCTTCAAAAAGGAAGAACAAAAAAGACCCTTCTCTGTTGCTCCCCTACCCTGCACACCTTTTCATAGTTTTCAAAAAAATTCCATATTCAAATCTCAATTATTGCTCTCATTTTGCGTATACACCATTCAAGATTCTCAGCCAGTGTTACTCCACGCACCATCCCTGAACACTCCAACATCATATCATATCATATCACGTTTTATTTACTCTTCATCTCAATCATCATAAGGTATCTTCAAGATTCAGATACATTTTTTTTGTTACATAAAGTTTAGGTGAGTTCGGTCTAGGGAAAGAGGAGAACATTCCTCAAGGTTATAAGAGAGCTTACAAAAATACTTAGATGTCGTCCACCAACAAAAAGGTTAGAACTCCCACAGTCGTTTCCACTTTAATTTTCTGCAAAACGCGAGCCGTTTCCACCTTTCCGCGCGTGAAACAGTAAACGCCGTTCAGTTTTAATTCCTTTTGTTGGTTATTCTGTTGACTATGAAGTACTTGAGGAATCTACGTTAGTCTCATCACGATCGTGTGTTCTTTTTTCTAGAAGTTGCTTGGAAAATGGAAACTGCAACCTCAAGGACGATACACTCATATCATTTTATATAGCATTTGGAAGAATTATTGGTTGTGTTCATTGCTTCATTTTTAATCGTCTTCGTATTTTTGGGTTTTCTGAGAAGTGCGTGTGTTGATGGGGGGTCAAAATTCTAAGGAGGAAAGTTGGAGGCAGAGTTCATCTGTCAGGTCTTCTTCTTCTTCTTGGAGTGCTTACTTGGATCCACTATCGAGTTATGGTTTCAATGAACCGCAACCATCATATTCTTCTTATGGCTATGAAGCTTATGGTGGCGATGGAATGGTACGCTATGATAGTACAAAGCTAGAGAGGAGGTACTCAAGAATTTCTGATCATTACAGTTCCATAGATCAGGTTAGTGAGGCTCTTGCACTTGCAGGCCTTGAGTCTTCTAATCTTATTGTTGGTGTTGATTTCACCAAGAGTAATGAGTGGACAGGCAAGAATTCATTCAATAGGCGAAGCTTGCATCACATTGGGAGAGGTCTGAACCCTTATGAGCAAGCAATATCAATTATTGGGAAAAGCTTGGCAGCATTCGATGAGGATAACTTGATCCCCTGCTTTGGATTTGGAGATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAACAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACCAAGTCCACAAGAACAGAAGACTGTGGATGCCATAGTTGCAGCTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACCGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACAAGGCAGCAATAGAGCTTAAGCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCAGATATAGTTCTCATGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCCACTTCTGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTGCAGGAGCCCCATAAATACAAGAATTAAGCTTTACTAATCGTATGTGGCTTGGGAATTGGTATTATTTTTTTTCTTATTTTTGTGTTGTGCCAGTCACAATTCTTTGGTTTTTTCTTGATTCGTTAAATTCATCAAAGGTTAGAAGTAGGTGTGGTTGGGTGCAACACTTGATCAGATGTATGTTTCCAGATATGAAACGGGGAATTCTCCATCAATTATTGTAGATATATTCATTTGATGAATTATATTTTTTCTTTTTTTTTCTTCCTATCATTGATTTTTTTCTTTTTTATTTAATGTAAAAG
>Glyma19g22800.2 sequence type=CDS gene model=Glyma19g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGGTCAAAATTCTAAGGAGGAAAGTTGGAGGCAGAGTTCATCTGTCAGGTCTTCTTCTTCTTCTTGGAGTGCTTACTTGGATCCACTATCGAGTTATGGTTTCAATGAACCGCAACCATCATATTCTTCTTATGGCTATGAAGCTTATGGTGGCGATGGAATGGTACGCTATGATAGTACAAAGCTAGAGAGGAGGTACTCAAGAATTTCTGATCATTACAGTTCCATAGATCAGGTTAGTGAGGCTCTTGCACTTGCAGGCCTTGAGTCTTCTAATCTTATTGTTGGTGTTGATTTCACCAAGAGTAATGAGTGGACAGGCAAGAATTCATTCAATAGGCGAAGCTTGCATCACATTGGGAGAGGTCTGAACCCTTATGAGCAAGCAATATCAATTATTGGGAAAAGCTTGGCAGCATTCGATGAGGATAACTTGATCCCCTGCTTTGGATTTGGAGATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAACAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACCAAGTCCACAAGAACAGAAGACTGTGGATGCCATAGTTGCAGCTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACCGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACAAGGCAGCAATAGAGCTTAAGCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCAGATATAGTTCTCATGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCCACTTCTGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTGCAGGAGCCCCATAAATACAAGAATTAAGCTTTACTAA >Glyma19g22800.3 sequence type=CDS gene model=Glyma19g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGGTCAAAATTCTAAGGAGGAAAGTTGGAGGCAGAGTTCATCTGTCAGGTCTTCTTCTTCTTCTTGGAGTGCTTACTTGGATCCACTATCGAGTTATGGTTTCAATGAACCGCAACCATCATATTCTTCTTATGGCTATGAAGCTTATGGTGGCGATGGAATGGTACGCTATGATAGTACAAAGCTAGAGAGGAGGTACTCAAGAATTTCTGATCATTACAGTTCCATAGATCAGGTTAGTGAGGCTCTTGCACTTGCAGGCCTTGAGTCTTCTAATCTTATTGTTGGTGTTGATTTCACCAAGAGTAATGAGTGGACAGGCAAGAATTCATTCAATAGGCGAAGCTTGCATCACATTGGGAGAGGTCTGAACCCTTATGAGCAAGCAATATCAATTATTGGGAAAAGCTTGGCAGCATTCGATGAGGATAACTTGATCCCCTGCTTTGGATTTGGAGATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAACAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACCAAGTCCACAAGAACAGAAGACTGTGGATGCCATAGTTGCAGCTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACCGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACAAGGCAGCAATAGAGCTTAAGCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCAGATATAGTTCTCATGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCCACTTCTGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTGCAGGAGCCCCATAAATACAAGAATTAAGCTTTACTAA
>Glyma19g22800.2 sequence type=predicted peptide gene model=Glyma19g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGQNSKEESWRQSSSVRSSSSSWSAYLDPLSSYGFNEPQPSYSSYGYEAYGGDGMVRYDSTKLERRYSRISDHYSSIDQVSEALALAGLESSNLIVGVDFTKSNEWTGKNSFNRRSLHHIGRGLNPYEQAISIIGKSLAAFDEDNLIPCFGFGDASTHDQDVFSFYPSERFCDGFEDVLSRYREIVPHLRLAGPTSFAPIIEMAMSIVEQSGGQYHVLVIIADGQVTKNVDTKHGRPSPQEQKTVDAIVAASKFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKSIPPSRKEAAFALAALMEIPSQYKAAIELKLLGSRQANAPQRHALPPPRYSSHAARFEPSIPPQHGNSHPFATAPSAPSSTSDNQLCPICLSNAKDMAFGCGHQTCCECGQDLQSCPMCRSPINTRIKLY* >Glyma19g22800.3 sequence type=predicted peptide gene model=Glyma19g22800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGQNSKEESWRQSSSVRSSSSSWSAYLDPLSSYGFNEPQPSYSSYGYEAYGGDGMVRYDSTKLERRYSRISDHYSSIDQVSEALALAGLESSNLIVGVDFTKSNEWTGKNSFNRRSLHHIGRGLNPYEQAISIIGKSLAAFDEDNLIPCFGFGDASTHDQDVFSFYPSERFCDGFEDVLSRYREIVPHLRLAGPTSFAPIIEMAMSIVEQSGGQYHVLVIIADGQVTKNVDTKHGRPSPQEQKTVDAIVAASKFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKSIPPSRKEAAFALAALMEIPSQYKAAIELKLLGSRQANAPQRHALPPPRYSSHAARFEPSIPPQHGNSHPFATAPSAPSSTSDNQLCPICLSNAKDMAFGCGHQTCCECGQDLQSCPMCRSPINTRIKLY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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