Report for Sequence Feature Glyma19g22760
Feature Type: gene_model
Chromosome: Gm19
Start: 27890929
stop: 27895665
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g22760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G27320 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:10090307-10092391 FORWARD LENGTH=428
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG1515
KOG
Arylacetamide deacetylase
JGI ISS
PTHR23024 Panther
MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES
JGI ISS
PTHR23024:SF10 Panther
CARBOXYLESTERASE-RELATED
JGI ISS
PF07859 PFAM
alpha/beta hydrolase fold
JGI ISS
UniRef100_I1N7G6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7G6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LK21-2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Isoform 2 of Probable carboxylesterase 11 n=1 Tax=Arabidopsis thaliana RepID=Q9LK21-2
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g22760
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g22760
Paralog Evidence Comments
Glyma05g06430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g22760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g078200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g22760
Coding sequences of Glyma19g22760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g22760.1 sequence type=CDS gene model=Glyma19g22760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGAGCGTGGCCGTGAAACTCTACAGCGTCTTCTTCAAGTTTCTTTTAAAGCACCGTTTGCAGAACCGGATCCAAGGCCGGCCCGAAGACTCCGACCCGTTCGGCGTCACGACCCGACCCGACGAATCGGTGGCTCCGGCCAACCCGTCATTCTCCGATGGTGTTGCCACTAAAGACATCCACATCGACCCCTTAACATCTCTCTCGATTAGAATTTTCCTTCCAGATTCCGCGCTCGAACCTAATTCCCAACCTAGCTCCAAACCCGAACCTGGATCGGTGAACCACGAAACGTCGTCGTTGCGCGCGGTGAGGCGCAACAGCTATGAGCCGGCAATCTTCTCGCCGCGGGAGGAGGAGCGACGGAACAGCGGCGGCGACAGTGGCGGTTGCGGCGGCGCTTACCGGGGGTACGCGCCGTCGCCGGCGGGGAATGGTCGCCGGAAAAAGTTACCGGTGGTTCTGCAGTTCCACGGTGGCGGGTGGGTGAGCGGGAGCAACGATTCGGTTGCGAACGACGTGTTCTGCCGGCGGGTCGCGAGGCTCTGCGAGGCGGTGGTGGTGGCGGTGGGGTACCGGCTGGCGCCGGAGAATCGGTATCCGGCCGCGTTCGAGGACGGGCTGAAGGTGCTGAATTGGCTGGCGAAGCAGGCAAATTTGGCGGAGTGCACTAAGTCAATGGGGGGGAGGAGGAGGTTGGAGGGTCAGCACAAGCATATTGTGGAAACCTTTGGGGCATCAGTGGTTGAGCCTTGGTTGGCTGCTCATGGAAATCCATCAAGGTGTGTTCTTCTTGGCGTGAGTTGCGGTGCAAATATTGCAGACTATGTGGCTCGAAAAGCTGTAGAAACAGGCACACTTTTGGACCCTGTCAAGGTAGTGGCACAGGTCCTGATGTATCCATTTTTTATTGGAAGTGTGCCTACTCGTTCTGAAATTAAGTTGGCAAACTCTTACTTTTACGACAAGGCAATGTGTATGCTAGCATGGAAACTATTCCTACCTGAGGAAGAGTTTAGCCTAGACCATCCAGCCGCCAATCCCCTAGCCCCAGGTCACGGTCCTCCTTTAAAGAAGATGCCTCCAACATTGACAGTAGTGGCAGAACATGACTGGATGAGGGACCGCGCCATTGCTTATTCAGAGGAGCTTAGGAAGGTGAATGTTGATGCACCTGTTTATGAGTATAAAGATGCAGTCCATGAATTTGCAACACTTGACGTACTTCTCAAAAGCCCTCAGGCCCAGGTTTGTGCCGAGGACATTGCCATCTGGGTCAAGAAATATATTTCGCTTCGAGGTCATGAATTCTCATATTGA
Predicted protein sequences of Glyma19g22760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g22760.1 sequence type=predicted peptide gene model=Glyma19g22760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPSVAVKLYSVFFKFLLKHRLQNRIQGRPEDSDPFGVTTRPDESVAPANPSFSDGVATKDIHIDPLTSLSIRIFLPDSALEPNSQPSSKPEPGSVNHETSSLRAVRRNSYEPAIFSPREEERRNSGGDSGGCGGAYRGYAPSPAGNGRRKKLPVVLQFHGGGWVSGSNDSVANDVFCRRVARLCEAVVVAVGYRLAPENRYPAAFEDGLKVLNWLAKQANLAECTKSMGGRRRLEGQHKHIVETFGASVVEPWLAAHGNPSRCVLLGVSCGANIADYVARKAVETGTLLDPVKVVAQVLMYPFFIGSVPTRSEIKLANSYFYDKAMCMLAWKLFLPEEEFSLDHPAANPLAPGHGPPLKKMPPTLTVVAEHDWMRDRAIAYSEELRKVNVDAPVYEYKDAVHEFATLDVLLKSPQAQVCAEDIAIWVKKYISLRGHEFSY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
