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Report for Sequence Feature Glyma19g22730

Feature Type:gene_model
Chromosome:Gm19
Start:27821870
stop:27837042
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g22730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G24200AT Annotation by Michelle Graham. TAIR10: Cytosol aminopeptidase family protein | chr2:10287017-10289450 REVERSE LENGTH=520 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0019538GO-bp Annotation by Michelle Graham. GO Biological Process: protein metabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0004177GO-mf Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity SoyBaseN/AISS
GO:0008235GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
KOG2597 KOG Predicted aminopeptidase of the M17 family JGI ISS
PTHR11963Panther PROTEASE M17 LEUCINE AMINOPEPTIDASE-RELATED JGI ISS
PF00883PFAM Cytosol aminopeptidase family, catalytic domain JGI ISS
PF02789PFAM Cytosol aminopeptidase family, N-terminal domain JGI ISS
UniRef100_G7JGP9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Leucine aminopeptidase n=1 Tax=Medicago truncatula RepID=G7JGP9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N7G4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7G4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g22730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g22730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g077800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g22730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g22730
>Glyma19g22730.1   sequence type=CDS   gene model=Glyma19g22730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACCCAAAGATGGCGTCATCCATAGTTGCTTCCTCCTCCTCATTCTCCTCTATTCTCACCACTCAATTTCTCACTCCCTCTTCATTTTCTTCTCTCTTTCTCAAAACCCTCACTTTAAGGTCCTCCACGCCGTTTCAGCGTCTTTCTTTTGCGTCACAACCACTGCGCAGGCTCATGGCTCGCGCCACCCTCGGCCTCACTCTCCCAGCCAACACCGAATCCCTTAAGGTTTCTTTCGCGGCAAAGGAGCTTGACGTGGCGGAATGGAAAGGGGACCTTCTCGCCGTTGGCGTAACGGAGAAGGACGTCGCGAGAAACGTGGAATCGAGATTCGAGAACGCGATTCTGAGCGCGTTGGACTCCAAGCTGGGCGGGTTGTTGGGCCAGGTCTCGTCCGAAGAGGACTTCAGCGGCAAACTTGGGCAGTCCACGGTTCTAAGAATCGCTTCCGGACTCGGATTCAAGCGCGTCGCCTTGCTTGGCCTCGGCGCCTCCGCGTCCACCACCTCCGCGTTCAAGTCCCTCGGCGAGGCCGTTGCCGCTGCCGCCAAGTCCGCCCAGGCCGGCCACGTCGCCGTCGCGCTTGCCTCTCCCGACGCACTCTCCACCGAGTCTAAGCCTAAAACAGCGTCCGCAATCGCATCTGGGACTTTGCTGGGAACTTTTGAGGATAACAGGTACAAGTCAGAGTCGAAGAAATCAGTGCTTAGTTCGGTGGATATTATTGGGCTTGGAACTGGACCTGAATTGGAGAAGAAACTTAAGTATGCAGCTGACATTTCTTCTGGAATCATTCTCGGAAGGGAGCTTGTGAATTCTCCGGCTAATGTGCTCACGCCAGGGGTATTGGCTGAAGAGGCATCAAAGATTGCTTCAACATATAATGATGTTTTTACTGCCAAAATATTAGATGCTGAGCAGTGTAAAGAATTGAAAATGGGGTCCTATCTTGGTGTTGCTGCAGCCTCAGCAAATCCTCCTCATTTTATCCATCTGTGTTATAAACCACCAACTGGACCTGTCAATGTCAAGTTAGCATTAGTCGGAAAAGGTTTGACTTTTGATAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTTGATTGAACTTATGAAATTTGATATGGGCGGTTCTGCTGCAGTTTTTGGAGCAGCAAAAGCTCTAGGTCAGATCAAACCTCTTGGAGTGGAGGTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGTATGCTTGTAACCAGGGTGCTGAAAAGATAGTTGACCTGGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTGAAGCGAGTGGGGAGAAACTATGGAGGTTGCCGTTAGAAGAAAGTTACTGGGAGTCAATGAAATCAGGAGTAGCTGATATGGTGAACACTGGTGGTCGACCAGGTAGTGCTATTACTGCGGCTCTTTTCTTAAAGCAGTTTGTTGACGAGAAGGTTCAATGGATGCATATTGACATGGCTGGTCCGGTGTGGAATGAAAAGCAGCGCTGTGCAACAGGATTTGGTGTTGCTACTTTGGTGGAATGGGTTTTGAGGAACGCATCTTAA
Predicted protein sequences of Glyma19g22730
>Glyma19g22730.1   sequence type=predicted peptide   gene model=Glyma19g22730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHPKMASSIVASSSSFSSILTTQFLTPSSFSSLFLKTLTLRSSTPFQRLSFASQPLRRLMARATLGLTLPANTESLKVSFAAKELDVAEWKGDLLAVGVTEKDVARNVESRFENAILSALDSKLGGLLGQVSSEEDFSGKLGQSTVLRIASGLGFKRVALLGLGASASTTSAFKSLGEAVAAAAKSAQAGHVAVALASPDALSTESKPKTASAIASGTLLGTFEDNRYKSESKKSVLSSVDIIGLGTGPELEKKLKYAADISSGIILGRELVNSPANVLTPGVLAEEASKIASTYNDVFTAKILDAEQCKELKMGSYLGVAAASANPPHFIHLCYKPPTGPVNVKLALVGKGLTFDSGGYNIKTGPGCLIELMKFDMGGSAAVFGAAKALGQIKPLGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACNQGAEKIVDLATLTGACIIGLGSSIAGVFTPSDDLAKEVFDASEASGEKLWRLPLEESYWESMKSGVADMVNTGGRPGSAITAALFLKQFVDEKVQWMHIDMAGPVWNEKQRCATGFGVATLVEWVLRNAS*






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