Glyma19g22730 - SoyBase

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Report for Sequence Feature Glyma19g22730

Feature Type:	gene_model
Chromosome:	Gm19
Start:	27821870
stop:	27837042
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g22730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24200	AT	Annotation by Michelle Graham. TAIR10: Cytosol aminopeptidase family protein \| chr2:10287017-10289450 REVERSE LENGTH=520	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0019538	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004177	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity	SoyBase	N/A	ISS
GO:0008235	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity	SoyBase	N/A	ISS
GO:0030145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion binding	SoyBase	N/A	ISS
KOG2597	KOG	Predicted aminopeptidase of the M17 family	JGI		ISS
PTHR11963	Panther	PROTEASE M17 LEUCINE AMINOPEPTIDASE-RELATED	JGI		ISS
PF00883	PFAM	Cytosol aminopeptidase family, catalytic domain	JGI		ISS
PF02789	PFAM	Cytosol aminopeptidase family, N-terminal domain	JGI		ISS
UniRef100_G7JGP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine aminopeptidase n=1 Tax=Medicago truncatula RepID=G7JGP9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N7G4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7G4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g22730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g22730 not represented in the dataset	Glyma19g22730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g22730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g077800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g22730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g22730

Limit To All Plant Sequences

>Glyma19g22730.1   sequence type=CDS   gene model=Glyma19g22730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACCCAAAGATGGCGTCATCCATAGTTGCTTCCTCCTCCTCATTCTCCTCTATTCTCACCACTCAATTTCTCACTCCCTCTTCATTTTCTTCTCTCTTTCTCAAAACCCTCACTTTAAGGTCCTCCACGCCGTTTCAGCGTCTTTCTTTTGCGTCACAACCACTGCGCAGGCTCATGGCTCGCGCCACCCTCGGCCTCACTCTCCCAGCCAACACCGAATCCCTTAAGGTTTCTTTCGCGGCAAAGGAGCTTGACGTGGCGGAATGGAAAGGGGACCTTCTCGCCGTTGGCGTAACGGAGAAGGACGTCGCGAGAAACGTGGAATCGAGATTCGAGAACGCGATTCTGAGCGCGTTGGACTCCAAGCTGGGCGGGTTGTTGGGCCAGGTCTCGTCCGAAGAGGACTTCAGCGGCAAACTTGGGCAGTCCACGGTTCTAAGAATCGCTTCCGGACTCGGATTCAAGCGCGTCGCCTTGCTTGGCCTCGGCGCCTCCGCGTCCACCACCTCCGCGTTCAAGTCCCTCGGCGAGGCCGTTGCCGCTGCCGCCAAGTCCGCCCAGGCCGGCCACGTCGCCGTCGCGCTTGCCTCTCCCGACGCACTCTCCACCGAGTCTAAGCCTAAAACAGCGTCCGCAATCGCATCTGGGACTTTGCTGGGAACTTTTGAGGATAACAGGTACAAGTCAGAGTCGAAGAAATCAGTGCTTAGTTCGGTGGATATTATTGGGCTTGGAACTGGACCTGAATTGGAGAAGAAACTTAAGTATGCAGCTGACATTTCTTCTGGAATCATTCTCGGAAGGGAGCTTGTGAATTCTCCGGCTAATGTGCTCACGCCAGGGGTATTGGCTGAAGAGGCATCAAAGATTGCTTCAACATATAATGATGTTTTTACTGCCAAAATATTAGATGCTGAGCAGTGTAAAGAATTGAAAATGGGGTCCTATCTTGGTGTTGCTGCAGCCTCAGCAAATCCTCCTCATTTTATCCATCTGTGTTATAAACCACCAACTGGACCTGTCAATGTCAAGTTAGCATTAGTCGGAAAAGGTTTGACTTTTGATAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTTGATTGAACTTATGAAATTTGATATGGGCGGTTCTGCTGCAGTTTTTGGAGCAGCAAAAGCTCTAGGTCAGATCAAACCTCTTGGAGTGGAGGTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGGTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGTATGCTTGTAACCAGGGTGCTGAAAAGATAGTTGACCTGGCAACATTAACTGGGGCCTGCATAATTGGTCTTGGATCCTCAATTGCAGGTGTGTTTACACCAAGTGATGACCTGGCAAAAGAAGTTTTTGATGCTTCTGAAGCGAGTGGGGAGAAACTATGGAGGTTGCCGTTAGAAGAAAGTTACTGGGAGTCAATGAAATCAGGAGTAGCTGATATGGTGAACACTGGTGGTCGACCAGGTAGTGCTATTACTGCGGCTCTTTTCTTAAAGCAGTTTGTTGACGAGAAGGTTCAATGGATGCATATTGACATGGCTGGTCCGGTGTGGAATGAAAAGCAGCGCTGTGCAACAGGATTTGGTGTTGCTACTTTGGTGGAATGGGTTTTGAGGAACGCATCTTAA

Predicted protein sequences of Glyma19g22730

Limit To All Plant Sequences

>Glyma19g22730.1   sequence type=predicted peptide   gene model=Glyma19g22730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHPKMASSIVASSSSFSSILTTQFLTPSSFSSLFLKTLTLRSSTPFQRLSFASQPLRRLMARATLGLTLPANTESLKVSFAAKELDVAEWKGDLLAVGVTEKDVARNVESRFENAILSALDSKLGGLLGQVSSEEDFSGKLGQSTVLRIASGLGFKRVALLGLGASASTTSAFKSLGEAVAAAAKSAQAGHVAVALASPDALSTESKPKTASAIASGTLLGTFEDNRYKSESKKSVLSSVDIIGLGTGPELEKKLKYAADISSGIILGRELVNSPANVLTPGVLAEEASKIASTYNDVFTAKILDAEQCKELKMGSYLGVAAASANPPHFIHLCYKPPTGPVNVKLALVGKGLTFDSGGYNIKTGPGCLIELMKFDMGGSAAVFGAAKALGQIKPLGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACNQGAEKIVDLATLTGACIIGLGSSIAGVFTPSDDLAKEVFDASEASGEKLWRLPLEESYWESMKSGVADMVNTGGRPGSAITAALFLKQFVDEKVQWMHIDMAGPVWNEKQRCATGFGVATLVEWVLRNAS*

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