Report for Sequence Feature Glyma19g22710
Feature Type: gene_model
Chromosome: Gm19
Start: 27773032
stop: 27780770
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g22710
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G40740 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16302229-16306371 REVERSE LENGTH=741
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005819 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: spindle
SoyBase N/A ISS
GO:0009524 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0051011 GO-mf
Annotation by Michelle Graham. GO Molecular Function: microtubule minus-end binding
SoyBase N/A ISS
UniRef100_G7KJU2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Medicago truncatula RepID=G7KJU2_MEDTR
SoyBase E_val: 7.00E-10 ISS
UniRef100_I1N7G2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7G2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g22710
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g22710
Paralog Evidence Comments
Glyma05g06480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g22710 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g077600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g22710
Coding sequences of Glyma19g22710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g22710.1 sequence type=CDS gene model=Glyma19g22710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGATGGACAGAGAGAAGGAGAGAGAGATAGAGCTGGAGAGTGCAATGTACACGAATTGCTTGTTGTTGGGTCTGGATCCGGCGATTATCGGAGTCGGAGCCTCCAACGCGACTCCTCGGGTCGGGCATTTCCGTCACTCGAACCCTAAATTGGGGGAACAGCTTCTCTACTTCATCCTTTCCTCTCTCAGAGGTCCAATTCAATCCGCGAAAGATTTCGATAAGGTCTGGCCGATTTTCGATTCCGCGCAGTCGCGTGATTTTCGTAAGGTTGTGCAAGGGATTATTAGCGAGCTTGAGTCGCAGGGCGCGCTTCCGAGGAGCAATTCGAGGGTTTCTTCACTTGCTACATGCTGTGGACCTAGGTTTGTTGAGCTTCTATGGCAACTTTCTTTGCATGCTTTACGAGAGGTTCATCGACGGACATTTACTGCTGACATATCTTCTAACCCATTGCCTGCGCCATTGACTGATGTAGCCTTTTCACATGCGGCTACTCTACTTCCAGTTACAAAGGCAAGAATAGCCCTTGAAAGAAGAAAGTTTCTTAAAAATGCAGAGATGGCTGTACAGCGGCAGGCTATGTGGTCGAATTTGGCTCATGAAATGACTGCTGAATTTCGTGGTTTATGTGCTGAAGAGGCTTATTTGCAACAAGAATTGGAAAAACTGCATGACTTGAGGAATAAAGTGAAGTTGGAAGGAGAACTCTGGGACGATCTTGTCTCTAGTTCAAGTCAAAATTCCCATTTAGTTTCAAAGGCTACTCGACTATGGGAATCTTTATTAGCTCGTAAAAGTCAACATGAAGTTCTTGCGTCTGGTCCTATTGAGGACTTGATAGCTCATCGAGAACATAGATATCGAATCTCTGGATCATCTTTGCTTGCAGCAATGGACCAGAGTTCTCAAGCTCCTTATTCAGATGTATTATCTGCTCAGTCTGGGGATTTGTCTGCGATGGATAACAAAGAAGAGAATGATGGATCACATTTTAGCAATGAGACATTGACAAGAGTGGATGACAGAACTGGAAGAGCCCACCAAACTGTTGATGTAGCAGAGGTTATACGGCGATGGACCCATGCCTTGCAGCGTATCCACAAACAATCACTTCATTTGGCAAAAGCGAATGATGGAGAGGGTCCTGATATATTGCGCAGTGCACAGGAAGGTGATTCAAGTGGCCATGCTGAGTCTTTAGCAGCAACCCTTGCAGAGCATCAGCAGCATTTGGCTAGCTTCCAGGTGCTTATTAACCAACTCAAGGACGTTGCTCCAACCATACAGAAGTCCATATCTGAGTGTACAGAAAAGGTTAACTGTATAGCCTCCAATCTACCTCCAATGAACAGACCTAATGGTCGATCAACGTCACCTATCCAGACACAGAGTAGTGGGAGGATGGACAATAGCACTGATGATGTTAGTGAGGTGACTTCTAGAATATCTAATATTCAGCTTGACAAGGTTTCTGTTAGTCCTCCCACTTTAAAGCTTCCTCAATTGTTTAGCTTGACTCCATCTTCTGGAAAAGCTGGAAATGTCCAAAGGCGGCACAATAATTCTCCTCAAACCAGCCAAACAGAGAACCTCTCTGATAGGAAATCACTGGATCCTCCTTCAAATAACGAAGTAGCAAGTTCAGCAGAAGATAGTGACAGTTCCTATGTCCACAATTTGAAGAGGTCTGTAAGAGAAGCGGCTCTGTCATTGCGGTCATGTAATTCAGAGTCATCACGGGATAGTCAATCTGATGAAAGTTCTGAGCATTTCTTTGTCCCTCTTTCAGAAACTAGCTTTTCTAATTTAGATGCAGACAAAAGGGGAGCTTCATTAAGGAGCAAAAGATTATTTGTATCTCAAATGGATGATTCCTTGCTTGAGAGTCATGCATCCGGTGGGCATGGGGAGAGAAAGTTTGATGAATTTCCAGATATGTTGAATGATTTGGAAAGGCTTTCTGTCTCTGATTATGACAATGTTAATGGTTTTCTCTCATATCCTGGTTCAAATTCAACATCTGATGCTCGGCGGTCAATTTTTGATTTTGAGGATGCCCAGGATCAAGTCTTCTCACCACCTTTGCTAATGGACTCATCACTTTTGACAGATCCATTTGAAGACTTGCTGGCCCCTCTGTCGGAGACTGAAACGGCCTTGATAGACCATTGA
Predicted protein sequences of Glyma19g22710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g22710.1 sequence type=predicted peptide gene model=Glyma19g22710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTMDREKEREIELESAMYTNCLLLGLDPAIIGVGASNATPRVGHFRHSNPKLGEQLLYFILSSLRGPIQSAKDFDKVWPIFDSAQSRDFRKVVQGIISELESQGALPRSNSRVSSLATCCGPRFVELLWQLSLHALREVHRRTFTADISSNPLPAPLTDVAFSHAATLLPVTKARIALERRKFLKNAEMAVQRQAMWSNLAHEMTAEFRGLCAEEAYLQQELEKLHDLRNKVKLEGELWDDLVSSSSQNSHLVSKATRLWESLLARKSQHEVLASGPIEDLIAHREHRYRISGSSLLAAMDQSSQAPYSDVLSAQSGDLSAMDNKEENDGSHFSNETLTRVDDRTGRAHQTVDVAEVIRRWTHALQRIHKQSLHLAKANDGEGPDILRSAQEGDSSGHAESLAATLAEHQQHLASFQVLINQLKDVAPTIQKSISECTEKVNCIASNLPPMNRPNGRSTSPIQTQSSGRMDNSTDDVSEVTSRISNIQLDKVSVSPPTLKLPQLFSLTPSSGKAGNVQRRHNNSPQTSQTENLSDRKSLDPPSNNEVASSAEDSDSSYVHNLKRSVREAALSLRSCNSESSRDSQSDESSEHFFVPLSETSFSNLDADKRGASLRSKRLFVSQMDDSLLESHASGGHGERKFDEFPDMLNDLERLSVSDYDNVNGFLSYPGSNSTSDARRSIFDFEDAQDQVFSPPLLMDSSLLTDPFEDLLAPLSETETALIDH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
