SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40810 | AT | Annotation by Michelle Graham. TAIR10: Cytochrome C1 family | chr5:16340200-16342327 FORWARD LENGTH=307 | SoyBase | E_val: 5.00E-178 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005746 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain | SoyBase | N/A | ISS |
| GO:0005750 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex III | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| GO:0045153 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity | SoyBase | N/A | ISS |
| KOG3052 | KOG | Cytochrome c1 | JGI | ISS | |
| PTHR10266 | Panther | CYTOCHROME C1 | JGI | ISS | |
| PF02167 | PFAM | Cytochrome C1 family | JGI | ISS | |
| UniRef100_G7KN99 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c1 heme protein n=1 Tax=Medicago truncatula RepID=G7KN99_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N7F4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7F4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g22530 not represented in the dataset |
Glyma19g22530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g076400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g22530.1 sequence type=CDS gene model=Glyma19g22530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAACTCCAATCTCATTCTCCTAATTCTTCTTTTAAGTCATCCATTATCACAAAGAAAGATGGTGCTGACTCTACTGGCAGCAACTCCTTAAGAGTGCTTGCTTTTGTTGGAGCTGGTGTGTCAGGGTTTTTAGGTTTTGCAACAACAGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGCATCCTTAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGCGAGATGTTTACACGCCCTGGTAAACTCAGTGATCGCTTTCCCCAGCCATATGCAAATGAAGCAGCAGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCAGATCTAAGTCTTGTTACCAAAGCTCGCCACAATGGTCAGAACTATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCTATGCCTAAAATGCTTAATGATGGCGCTGTTGAATATGAAGATGGTACCCCTGCTACAGAATCTCAGATGGGTAAAGATATTGTATCATTCCTGACTTGGGCTGCGGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTCAAATGGATATTTGTTCTATCACTGGCATTACTTCAAGCTGCCTATTACCGTCGCCTTCGGTGGTCCGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG
>Glyma19g22530.1 sequence type=predicted peptide gene model=Glyma19g22530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGGVIRQLFRRKLQSHSPNSSFKSSIITKKDGADSTGSNSLRVLAFVGAGVSGFLGFATTAFADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLVTKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDIVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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