Glyma19g22490 - SoyBase

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Report for Sequence Feature Glyma19g22490

Feature Type:	gene_model
Chromosome:	Gm19
Start:	27280160
stop:	27291607
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g22490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63380	AT	Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein \| chr5:25387581-25390026 REVERSE LENGTH=562	SoyBase	E_val: 1.00E-117	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004321	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA synthase activity	SoyBase	N/A	ISS
GO:0016207	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity	SoyBase	N/A	ISS
KOG1176	KOG	Acyl-CoA synthetase	JGI		ISS
PTHR24096	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24096:SF43	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_G7I2P5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 4-coumarate-coa ligase n=1 Tax=Medicago truncatula RepID=G7I2P5_MEDTR	SoyBase	E_val: 2.00E-154	ISS
UniRef100_UPI000233EBCE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EBCE related cluster n=1 Tax=unknown RepID=UPI000233EBCE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g22490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g22490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g22490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g22490

Limit To All Plant Sequences

>Glyma19g22490.2   sequence type=CDS   gene model=Glyma19g22490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCCCTCTCCCTCCGTCTTAACTCGCTGCAGTCGGACTTGATCACCGCCATTATCGATGCCACCACCGGCCACTGCCTTTCCTACAACGAGATCATCCACCGCGTCGAAACCCTAGCCACCAACCTCACCACCGTCGTTAAACTCTCCAAAGGCGATACTGTGCGCGTTCTCTCCTCAAACCTAATCCAAATTCTGATCCTCTACTTCCCACTCCTTTCTCTCGGCGTGATCCTCTCCCTGGCGAACCCTCTCTCCACGCGCTTCGAGCTCACGCACCTCTTCAACATAAGCGATCCATCAATCATCTTTGCAGTAACTTCATTCGTTGAAAACACACATGACTTTCATGTTAGAATCGTGGTCCTTGACTCGCCCGAGTTCGACTCGCTCACGAAGACTCAGATTCAGATACATCCTCCGAGTCCACTCGTTTCCCTAGCAGGAGTGAATCAGTCTGACGTGGCAGTGATTCTTTACTTCTCGGGAACCACGGGGACGGTGAAGGGTGTGATGCTCACGCACCGGTGCTTGTTAGTTTTGAGGGCTATGGTTATGTCAGACACGGTGGTGGCTATGGAAAGGTTCAGTTTGAAGGGGATTCTGAGCGTCGTGGAGAGGTTCCTAGTGACTAACCTCGCGGTGGTCCTCACGCTAGTGGGATACGGTTTAACTGAGTCCGCGGTTACCCGAATCACTCCGGAGGAGGCTAATCGGGTGGGAGCAACAGGTAAACTGATACCAAGTATAGAAGCCAAAATTGTGAACCCGGAAACAGGGGAAGCCATGTTTCCTGGTGAACAAGGAGAATTATGGATCAAAGGACCTTATGTTATGAAAGGTTATGCTGGTGACCCAAAAGCAACTTCAGAAACTTTGGTGGATGGGTGGTTAAGGACTGGTGACCTTTGTTATTTCGATAATGAAGGTTTCTTGTATGTTGTAGATAGGTTGAAAGAGTTGATCAAATACAAGGGCTACCTGGTTGCTCCGGCGGAGCTAGAAGAGTTGCTTCTATCTCATCCAGATATAAATGATGCTGCAGTTATTCCATACCCTGATGAAGTAGCAGGCCAGGTGCCCATGGCGTTTGTGGTAAGACAACCACAAAGTCTCCTTGACACAACAAAGGTTATTGATTTTGTTGCCAAACAGGTTTCACCTTACAAGAAAATAAGGCGTGTAGCATTTGTTAATTCCATACCCAAGAATGATGCGGGAAAGATACTGAGGAAGGACTTAAAACTTGCCCTCTCTAGGCTGTAA

Predicted protein sequences of Glyma19g22490

Limit To All Plant Sequences

>Glyma19g22490.2   sequence type=predicted peptide   gene model=Glyma19g22490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSLSLRLNSLQSDLITAIIDATTGHCLSYNEIIHRVETLATNLTTVVKLSKGDTVRVLSSNLIQILILYFPLLSLGVILSLANPLSTRFELTHLFNISDPSIIFAVTSFVENTHDFHVRIVVLDSPEFDSLTKTQIQIHPPSPLVSLAGVNQSDVAVILYFSGTTGTVKGVMLTHRCLLVLRAMVMSDTVVAMERFSLKGILSVVERFLVTNLAVVLTLVGYGLTESAVTRITPEEANRVGATGKLIPSIEAKIVNPETGEAMFPGEQGELWIKGPYVMKGYAGDPKATSETLVDGWLRTGDLCYFDNEGFLYVVDRLKELIKYKGYLVAPAELEELLLSHPDINDAAVIPYPDEVAGQVPMAFVVRQPQSLLDTTKVIDFVAKQVSPYKKIRRVAFVNSIPKNDAGKILRKDLKLALSRL*

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