SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63380 | AT | Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr5:25387581-25390026 REVERSE LENGTH=562 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004321 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fatty-acyl-CoA synthase activity | SoyBase | N/A | ISS |
| GO:0016207 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4-coumarate-CoA ligase activity | SoyBase | N/A | ISS |
| KOG1176 | KOG | Acyl-CoA synthetase | JGI | ISS | |
| PTHR24096 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24096:SF43 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00501 | PFAM | AMP-binding enzyme | JGI | ISS | |
| UniRef100_G7I2P5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 4-coumarate-coa ligase n=1 Tax=Medicago truncatula RepID=G7I2P5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N7E7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7E7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g22460 not represented in the dataset |
Glyma19g22460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g15220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g075800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g22460.1 sequence type=CDS gene model=Glyma19g22460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGAGAGAAAAAGAATAGATCCAAGGAGCGGTTTCAACCGCGCTTCCAGAATCTTCCACAGCCTCAAGCCACCACTCCCCCTCCCTCCTCCCAACGCCACCTTCTCCGCCACAACCTACGCCCTCTCCCTCCGCCGCAACTCGCTATTTCCCGACTCCACCACCGCCCTCATCGATGCCACCACCGGCCACCGCCTCTCCCACTACGAGGTCATCAACCGCATCGAAACCCTAGCAAATAATTTCACCTCTATCCTCAAACTCTCCAAAGGCGACACTGCGCTCATTCTCTCCCCAAACCTCATCCAAGTTCCAATCCTCTGCTTCGCACTTCTTTCGCTTGGCGTGGTCGTCTCTCCCGCGAACCCTATCTCCACGCGCTCCGATCTCACGCGCTTCTTCCACCTCAGCAAACCTGCAATTGTCTTCACAGTAACTTCAGTCGTTGAGAAAACACAAGACTTTCATGTTAGAACCGTACTCCTCGACTCGCCCGAGTTCGACTCGCTCACGAAGACTCGGATTCAGATACATCCTCCGAGTCCACTCGTTTCCCCCGTGACTCAATCTGACGTGGCAGCGATTTTATACTCGTCGGGGACCACGGGGATGATGAAGGGTGTGGTAATGACGCACCGTAACCTAACGGCGTTAGCCGCGGGATACGACGCCGTTAGAGTAAACAGAAAGTATCCCGCGGTGTTCTTCTTTACGATGCCGTTTTTCCACGTGTACGGGTTCACGCTCAGTTTTAGGGCAATGGTGCTGTCGGAGACGGTGGTGATAATGGAGAGGTTCAGTTTGAGGGGGATGCTGAGCGCCGTGGAGAGGTTCGGAGTGACACACCTGGCGGTGGTGCCGCCGCTGATGGTAGCTTTGACGAAGGACAGCGTCACCAACGGGTACGATTTGAAGACGCTGGAAGGGGTTACGTGCGGTTCGTCTCCACTGGGAAAGGAAACCGCTGAGGCTTTCAAAGCAAAGTTCCCCAACGTCATGATCCTCCAGGGATACGGTTTAACAGAGTCAACTGCTGGGGTTGCCCGAACATCTCCAGAGGACGCTAATCGGGCAGGAACAACAGGTAGACTGGTATCAGGAGTGGAAGCCAAAATTGTGAATCCAAATACAGGAGAAGCCATGTTTCCCTGTGAACAAGGAGAACTTTGGATCAAATCACCTAGTATTATGAAAGGTTATGTTGGTGACCCTGAAGCAACTTCAGCAACTTTGGTGGATGGGTGGTTAAGGACTGGGGACCTCTGTTATTTTGATAACGAAGGGTTCTTGTATGTTGTAGATAGATTGAAAGAGTTGATCAAATACAAGGGGTACCAGGTTGCTCCGGCAGAGCTCGAACAATATCTCCTGTCTCACCCAGAAATAAATGATGCCGCGGTTATTCCATACCCTGATGAAGAAGCCGGCCAGGTGCCCATGGCGTTTGTGGTAAGACAACCCCAAAGTTCCCTGAGTGAAATAGAGATAATTGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAAATAAGGCGTGTAGCATTTGTTGATTCAATACCGAAGAATGCCTTAGGAAAGATACTAAGGAAGGACTTAAATAAACTTGCTCTCTCTAGGCTATAA
>Glyma19g22460.1 sequence type=predicted peptide gene model=Glyma19g22460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDERKRIDPRSGFNRASRIFHSLKPPLPLPPPNATFSATTYALSLRRNSLFPDSTTALIDATTGHRLSHYEVINRIETLANNFTSILKLSKGDTALILSPNLIQVPILCFALLSLGVVVSPANPISTRSDLTRFFHLSKPAIVFTVTSVVEKTQDFHVRTVLLDSPEFDSLTKTRIQIHPPSPLVSPVTQSDVAAILYSSGTTGMMKGVVMTHRNLTALAAGYDAVRVNRKYPAVFFFTMPFFHVYGFTLSFRAMVLSETVVIMERFSLRGMLSAVERFGVTHLAVVPPLMVALTKDSVTNGYDLKTLEGVTCGSSPLGKETAEAFKAKFPNVMILQGYGLTESTAGVARTSPEDANRAGTTGRLVSGVEAKIVNPNTGEAMFPCEQGELWIKSPSIMKGYVGDPEATSATLVDGWLRTGDLCYFDNEGFLYVVDRLKELIKYKGYQVAPAELEQYLLSHPEINDAAVIPYPDEEAGQVPMAFVVRQPQSSLSEIEIIDFVAKQVAPYKKIRRVAFVDSIPKNALGKILRKDLNKLALSRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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