Glyma19g22433 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g22433

Feature Type:	gene_model
Chromosome:	Gm19
Start:	27141951
stop:	27147740
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g22433

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28780	AT	Annotation by Michelle Graham. TAIR10: PIF1 helicase \| chr5:10812907-10814173 REVERSE LENGTH=337	SoyBase	E_val: 7.00E-33	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR10492	Panther	HELICASE-RELATED	JGI		ISS
PF05970	PFAM	PIF1 helicase	JGI		ISS
UniRef100_G7KMV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Defensin-like protein n=1 Tax=Medicago truncatula RepID=G7KMV8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233957A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233957A related cluster n=1 Tax=unknown RepID=UPI000233957A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g22433

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g22433 not represented in the dataset	Glyma19g22433 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g22433 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g075500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g22433

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g22433

Limit To All Plant Sequences

>Glyma19g22433.1   sequence type=CDS   gene model=Glyma19g22433   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGATAAACACAATGCGCATGCTAAAAGTTTTAGGATGGCTAGAGATAGATTGGCAAATAGTGATGTCGATAATGTCATATTAAGAATGATATCTACTCGTGAAAAGGATGGTCGGACATACAATGTTCCAACTGTTTCATGTGATTTTAATCCCAACTCAAGAAGAGATATTATTCTTGAGACTGAAAATGGACAATTACAGAGAATACATGAATTGCACTCTAGCTATCTAGGCCTACAATTCCCTCTGCTTTTCCCTTATGAGTGGTTTGCTTATAGACTTCAGTGTAGACCAAATGAAGCTCAAACTTTATTGCATTCTAGAAGACTATTTCAACAATTCATTGTTGAAGCATATACCATGGTTGAATCGGAAAGACTCAACTACATTAGGAACAACCAAAAGAAACTTAGAGTTGACAAGTATTGTAGCTTACAAAATTCACTGGATGCTGGGACAAACCAAGGTTTAAATAAAGGCAAGAGAGTAATTTTGCCTTCTACCTTTGTTGGCAGCCCCCACTACATGGATCAACTATACTTTGATGGTATGGCGATATGCAGCCATGTTGGTTTCCCAAATCTTTTTATCACTTTAACATGTAATCCAAATTGGCCAGAAATCCATAGATTACTTGCGCCATTGAATTTGAAACCATCAGATAGACCATACATTATCTCACGAGTTTTCAAGTTGAAATATGAAGAAATGCTTTCAGACCTAAAAAAGAGTCACCTACTTGGAAAAGAAGTGGCATATATGCAGACAATAGAATTCCAAAAACGAGGACTTCCTCATGTCCATTTATTGTTGTTTTTGCACCCAGACAATAAATATCCAACTTCAGACGAAATTGACCAGATTATATCAGCAGAGATACCTTCAAGGGAAGATGACCCAGAACTCTATAAATTGGTGCAAAATCATATGGTTCATGGCCCATGTGGAATTATACACTTTGAATATCCATGTATGAAAGAAGGAAAGTGTAGCAGATTTTATCCTGAAATGTTCCAACCTCGCACCCTTTTAGATCCAAATGGTTATCCAATATATCGTAGGAGAAATGATGGTCATACAATTTCAAAGAATGGTGTTATCATTGATAATAGACACATCGTACCTTATAATCCAAAGTTACTGAAAAAATACCAAGCGCATGTCAATATTGAATGGTGCAATCAAAGTACTTCAATCAAATATTTATTCAAATACATAAACAAAGGGTATGACAGAGTCACTGTTGTTATGCTTTATGATGACAATGATGAAATCCAGAATGCTACCAACCAAAAAGATGAGATTAAAGAATATATAGACTATAGAATTTTTAGTTTTCCAATACATGCTAGGAAACCTGCTATTGAAAGATTATATTTCCATCTTCCAGGCCAACACAATGTTCTTTATGAGGACCATGATGGTATTGGTGATGTCCTATCCAAGCCAAGCATTTCAGATTCCAAATTTTTAGCTTGGATGAATGCCAACAAATTTTTTTCAGAAGGAAGAAATCTGACTTATTCAGAATTCATTTCAAAGCTTATATGGGTCCCACCAACGACAGGAGAATTGTTTTATTTGAGGATAATGCTTACTGCCTGCAAAGGAGCAACTTCATTTGAGGATATTAGAACTGCTACAAATATTCAATACCTTACATATAGAGAAGCATGCTTTGTCATGGGGGTTTTACAAGATGACAGAGAATTCATTGAAGCAATCAAAGAGGCAAAGGACTGGGGCACAACTAATTATTTGAGGAAATTATTTGTGTTGATGCTTTTAACAGGCGCCATCAATAAACCTGAAGAAGTTTGGAATCAAACATGGCATTGGCTAGCTGATGACATTGCATATCATTATAGCAAATCAACAATAAATACAGATGAACAAACATCTATTTATAAACAAATCATTGAAGTCGTCAACAAAAATCAAGGTGGCATGTTTTTCTTATATGGATCTGGAGGTACAGGAAAAACCTTCATATGGAGAACATTGGCAACTTCATTGAGAGCAAACAATCAAATTGTTATTAAAGTTGCTTCCAGTGGCATAACTTCTTTATTGTTACCAGGCAGCAGGACTGCACATTCAAAATTCAAAATACCTGTACCCATTTTTGAAGACTCAACATGCAACATTCATCAAGGAACACCAATGGCTCACAAATTTTGTTTTGAAGTGCTTGACCAAAGTTTAAGAGATATAATTAAAACTAAACCCAGCTCAAATCAAATATTTGGAGGTAAAGTCATCGTATTTGGTGGAGGATTCCAACAAATACTGCCAGTCATTCCAAGGGGAAGTCGCTTAGACATTGTCAACACAACAATCAATTCCTCTTATTTACAGGATTTCTGTCAGAACAATGAACAATCACCAAATGAACAAGAAATTGCCGCATTTGCTAAGTGGATCCTTGACAATGGAGATGGAATTATTGGACATCAAAATGATGGCTATTCCACAATTGAAATCCCTGAGGACCTATTGATAACTCAATATGATGATCCAATCCATGCCATAGTTAACTCAACATTCCCAGATTTAACACAACATCACAACGATGGTCATCTGCCAAATCATTGTATCAAGCTTAAAATAGGAACTCCTATAATGCTTTTAAGGAACTTAGATCAAACTCAAGGCCTGTGTAATGACACTAGATTAATAACTAGAAGATTGGCAAAGCATGTAATTGCGGCTGAAATCATTTCTAGCAAATATTCAGGCCATATGGTTTACATCCCAAGAATGTCCATGTCCCCTTCACAATCACCATGGCCTTTTAAACTTTTAAGGAGACAATTTCCAATCATGTTGTCTTACGCAATGACAATTAACAAATCTCAGGGACAGTCACTGTCCACAGTCGAACTTTATTCGCCAAAACCAGTGTTTAGCCATGGTCAATTATAA

Predicted protein sequences of Glyma19g22433

Limit To All Plant Sequences

>Glyma19g22433.1   sequence type=predicted peptide   gene model=Glyma19g22433   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDKHNAHAKSFRMARDRLANSDVDNVILRMISTREKDGRTYNVPTVSCDFNPNSRRDIILETENGQLQRIHELHSSYLGLQFPLLFPYEWFAYRLQCRPNEAQTLLHSRRLFQQFIVEAYTMVESERLNYIRNNQKKLRVDKYCSLQNSLDAGTNQGLNKGKRVILPSTFVGSPHYMDQLYFDGMAICSHVGFPNLFITLTCNPNWPEIHRLLAPLNLKPSDRPYIISRVFKLKYEEMLSDLKKSHLLGKEVAYMQTIEFQKRGLPHVHLLLFLHPDNKYPTSDEIDQIISAEIPSREDDPELYKLVQNHMVHGPCGIIHFEYPCMKEGKCSRFYPEMFQPRTLLDPNGYPIYRRRNDGHTISKNGVIIDNRHIVPYNPKLLKKYQAHVNIEWCNQSTSIKYLFKYINKGYDRVTVVMLYDDNDEIQNATNQKDEIKEYIDYRIFSFPIHARKPAIERLYFHLPGQHNVLYEDHDGIGDVLSKPSISDSKFLAWMNANKFFSEGRNLTYSEFISKLIWVPPTTGELFYLRIMLTACKGATSFEDIRTATNIQYLTYREACFVMGVLQDDREFIEAIKEAKDWGTTNYLRKLFVLMLLTGAINKPEEVWNQTWHWLADDIAYHYSKSTINTDEQTSIYKQIIEVVNKNQGGMFFLYGSGGTGKTFIWRTLATSLRANNQIVIKVASSGITSLLLPGSRTAHSKFKIPVPIFEDSTCNIHQGTPMAHKFCFEVLDQSLRDIIKTKPSSNQIFGGKVIVFGGGFQQILPVIPRGSRLDIVNTTINSSYLQDFCQNNEQSPNEQEIAAFAKWILDNGDGIIGHQNDGYSTIEIPEDLLITQYDDPIHAIVNSTFPDLTQHHNDGHLPNHCIKLKIGTPIMLLRNLDQTQGLCNDTRLITRRLAKHVIAAEIISSKYSGHMVYIPRMSMSPSQSPWPFKLLRRQFPIMLSYAMTINKSQGQSLSTVELYSPKPVFSHGQL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain