Report for Sequence Feature Glyma19g22320
Feature Type: gene_model
Chromosome: Gm19
Start: 26927587
stop: 26935550
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g22320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G01810 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). | chr3:289218-292557 FORWARD LENGTH=921
SoyBase E_val: 0 ISS
GO:0000272 GO-bp
Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process
SoyBase N/A ISS
GO:0005982 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch metabolic process
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009664 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization
SoyBase N/A ISS
GO:0010075 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_Q9SGJ0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F28J7.14 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SGJ0_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI000233EBCC UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EBCC related cluster n=1 Tax=unknown RepID=UPI000233EBCC
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g22320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g22320
Paralog Evidence Comments
Glyma05g15115 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g22320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g074600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g22320
Coding sequences of Glyma19g22320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g22320.2 sequence type=CDS gene model=Glyma19g22320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTCTAGGCATGAGAGGAAAGAACAGGAGAGGAGTCACAGTTCAAATTGATTTCCTCATTCACATTCAGGAGATTAAGCCTTGGCCTCCTTCACAATCTCTAAGATCCCTGCGATCTGTGTTGATAGAATGGAAGAATGGTGAATGTGCATCAGGTTCTACCAATCTTGTTGCCCCTTCACTTGGTTCAGTTATAGGTGAAGGGAGAATTGAATTTAATGAGTCATTTAGGCTTCATGTAACTTTGTTGAGGGACATGTCTGTGAGAGGTGGTGATGCCGATGTGTTCCAAAAGAATTGCTTGGAGTTCAACTTGTACGAGCCGCGGAGAGATAAGACTGTTAAGGGCCAGTTGCTGGCAACTGGCGTCGTAGATTTGGCAGAATATGGGGCACTTAAAGAGTCCTTGAGCACTAGTGTTCCTATGAACTGCAAGAGGAGCTACAGGAACACAGATCAGCCACTTTTGTTCATTAAAATTCGGCCCGTTGAAAGGAATCGCGCTAGTGCCTTGTTGAAGGATAGTAATGGTGGTGACTCAGTGTCAACACTCATGAATGAAGAATATGCTGAGGAAGCCGAGATTGCCTCTTTTACTGATGATGATGTCTCGTCACATTCATCTGTGGCAGCAGTTTCTACTTCAATTGAGTCCACTGGTTTTACCCAGCCAAAATTTGGAACGAACGAACCAATTAGCAACAACACTGGTGTGAATGCTAAGAAACATCCCTTGGCTTCAGAAAGAAGGCTTGAGAACATGAATATGGTGCAAGAAGATACACACAAGCTTGAGAGGAGTTCTTACGTGTCATCAACGGATGTATCTCCTGTTATCAGGAGTCTGGTAAATGGTCATGCTTCTAATTCTCCTAATCGCAATTCATTGTCAATCCAAAAGCTAGCTGCTTCACCTAGTGCCGATTCTTCATCACCATCTTCAGTTTGTGACAATTTAGACATAAATCCTAGGAGCATGACAAGAAGCAGTGGTCATGAAAGTTTGGGTCAGAGTTTTCATGAAAAGCTTGCTAATTACAGAAATATAGTTGCTGATGTCCAAAGAAACAGTAATGAAAGTACTTTTGGCATTTATTCAAAACATACATCATCTCAAGATAGAGGTCACTTCACTAGCAAAAATCCAGGCTATGAAAACTTTGATACTACTAAATGTGATGACAAATTAAATGGGAGATGTAAGGAAGCTGACAAATATTTTATGAAGGAGAGATCAAATTTGGATGGAAATGAAAGATCTAATTTGGATGGGCAAAACTACATAGAAGATGAACAATTGGTAGCACAAGAGGCCAGAGATCAAGCCTTATTGGGTAGCAATACACATTCTTATGGGGAGTCAAATACGAGTATGCAGGAAAATATTCTCAAAAGTGAAAGATTAAAGAACACGAAGTCGGTGAGGTTACCGGGAGACTCAGTTAGGAATGCTGAATTAAATGAAAATGGAATTCTTGGAGATGCACAAAACAGTTCAGGGAACAGAAGCAATGACAGAAGAGATTCTAAGATTCTTGCAAAGGAAATAAGAAGTGGTACTCTAGATGGAAAAATTGAGCATTTAGAAAAGAAGATAAAGATGCTTGAAGGAGAGTTAAGAGAAGCCGCTGCTATTGAGGCTGCTTTATATACAGTAGTTGCTGAGCATGGAAACTCCACAAGTAAAGTTCATGCCCCAGCTCGGCGCCTTTCCAGGCTCTATCTTCATGCTAGTAAAGAAAATCTTCAAGAAAGAAGGGCTGGGGCAGCTAAAAGTTCAGTTTCAGGATTAGTACTTGTTACAAAGGCATGTGGAAACGATGTCCCAAGGTTGACTTTTTGGTTGTCTAATACTATAGTGTTGAGAACAATTATAAGCCAAACAGTCAAAGTTCCACCAAATCCTGCTGGATCTGGTAGAAGAAAGAAAACTGAGGGAGAGGAGGGGTGTGGCAAGATAACAACCTCACTAAGGGTGAAGGGGTTATACCCCAGAAAAACTGAAAATACAGCTTTAGGATATGAAGGTTTTGGTAACTGGGATGATCCCCATATATTCATATTAGCACTCGAAAAGGTTGAAGCTTGGATCTTCTCTCGCATTATAGAATCCATCTGGTGGCAGACTCTGACTCCACATATGCAGCACACCATGGTGACCAACAAGGAAGTGATGTCTGCCACAAGAAAAGACTATAGAAGGACTTCAAGCTCATGTGATCAAAAGCAGGGTAACTTGTCTCTATATATTTGGAAGAATGCTTTTAGGGAAGCCTGTGAAAGGGTCTGTCCTATTCGAGCCCGAGGGCATGAGTGTGGCTGTCTGTCTATGCTTTCTAGATTGATAATGGAGCAGTGTGTGGCGAGGTTAGATGTGGCTATGTTCAATGCCATTCTTCGCGAATCTGCTGATGATATACCAACTGATCCTGTATCTGATGCTATTAGTGATCCCAACGTTCTCCCCATTCCACCTGGAAAATCAAGCTTCGGAGCTGGTGCACAGCTAAAAACTGTGATTGGGACCTGGTCTAGATGGTTGACTGATCTATTTGGCATGGATGATGTTGACTCAATTGAAGATAAAGCTGACCCTGATCACAATGAAGAGAGAGAAAATACATTCTTTAAGTCCTTCAGTATTCTCAATGCACTAAGTGACCTCTTGATGCTTCCTAAGGATATGCTGTTAAGTGCATCCATAAGGAATGAGGTGTGCCCAATGTTTAATGCAACACTTATCAAGAAGATTCTAGACAACTTTGTCCCGGATGAGCTTTGCCCTGATCCTGTTCCCTCTAATGTTTTTGAAGCTTTGAACTCAGAGAATGAAATGGAAGATGGAAAGGAGTATGTCAACAACTTTCCATGCATTGCAGCTCCCATTGCCTATTCACCACCACCAGCAACTTCCATTGCAAGCATTGTTGGGGAGATAGGAAGCAAATCTCAACTAAGAAGAAACAAATCTTCTGTTGTTAGGAAGTCACACACAAGTGATGATGAGCTCGATGAATTGAAGTCCCCATTGTCTTCAATATTCTTCAGTGTTTCCTCATCCCCAAAAGTTTTAACAAAATCCAGCTTGAAGTTCAAAGAAATTCGCAACCAATCTCCTGTCAGATATGAACTCCTTAGGGATGTATGGATGAAAAGCGATTAG
Predicted protein sequences of Glyma19g22320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g22320.2 sequence type=predicted peptide gene model=Glyma19g22320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVLGMRGKNRRGVTVQIDFLIHIQEIKPWPPSQSLRSLRSVLIEWKNGECASGSTNLVAPSLGSVIGEGRIEFNESFRLHVTLLRDMSVRGGDADVFQKNCLEFNLYEPRRDKTVKGQLLATGVVDLAEYGALKESLSTSVPMNCKRSYRNTDQPLLFIKIRPVERNRASALLKDSNGGDSVSTLMNEEYAEEAEIASFTDDDVSSHSSVAAVSTSIESTGFTQPKFGTNEPISNNTGVNAKKHPLASERRLENMNMVQEDTHKLERSSYVSSTDVSPVIRSLVNGHASNSPNRNSLSIQKLAASPSADSSSPSSVCDNLDINPRSMTRSSGHESLGQSFHEKLANYRNIVADVQRNSNESTFGIYSKHTSSQDRGHFTSKNPGYENFDTTKCDDKLNGRCKEADKYFMKERSNLDGNERSNLDGQNYIEDEQLVAQEARDQALLGSNTHSYGESNTSMQENILKSERLKNTKSVRLPGDSVRNAELNENGILGDAQNSSGNRSNDRRDSKILAKEIRSGTLDGKIEHLEKKIKMLEGELREAAAIEAALYTVVAEHGNSTSKVHAPARRLSRLYLHASKENLQERRAGAAKSSVSGLVLVTKACGNDVPRLTFWLSNTIVLRTIISQTVKVPPNPAGSGRRKKTEGEEGCGKITTSLRVKGLYPRKTENTALGYEGFGNWDDPHIFILALEKVEAWIFSRIIESIWWQTLTPHMQHTMVTNKEVMSATRKDYRRTSSSCDQKQGNLSLYIWKNAFREACERVCPIRARGHECGCLSMLSRLIMEQCVARLDVAMFNAILRESADDIPTDPVSDAISDPNVLPIPPGKSSFGAGAQLKTVIGTWSRWLTDLFGMDDVDSIEDKADPDHNEERENTFFKSFSILNALSDLLMLPKDMLLSASIRNEVCPMFNATLIKKILDNFVPDELCPDPVPSNVFEALNSENEMEDGKEYVNNFPCIAAPIAYSPPPATSIASIVGEIGSKSQLRRNKSSVVRKSHTSDDELDELKSPLSSIFFSVSSSPKVLTKSSLKFKEIRNQSPVRYELLRDVWMKSD*