Glyma19g22310 - SoyBase

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Report for Sequence Feature Glyma19g22310

Feature Type:	gene_model
Chromosome:	Gm19
Start:	26914909
stop:	26916620
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g22310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05210	AT	Annotation by Michelle Graham. TAIR10: Surfeit locus protein 6 \| chr5:1548198-1549534 FORWARD LENGTH=386	SoyBase	E_val: 2.00E-92	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR14369	Panther	SURFEIT LOCUS PROTEIN 6	JGI		ISS
PF04935	PFAM	Surfeit locus protein 6	JGI		ISS
UniRef100_B9RJ85	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Caldesmon, putative n=1 Tax=Ricinus communis RepID=B9RJ85_RICCO	SoyBase	E_val: 5.00E-112	ISS
UniRef100_I1N7D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7D4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g22310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g22310

Paralog	Evidence	Comments
Glyma05g15100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g22310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g074500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g22310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g22310

Limit To All Plant Sequences

>Glyma19g22310.2   sequence type=transcript   gene model=Glyma19g22310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAACTTAAAAAGAGATAACAAGCAGAATAAAGGAAAATCACTTAGGCCCAGTTCCCCCTTAAACCCTATTCGCCGCAATAAAACCTTCTAGGTCGAAGCAATAAAACGCCGGAGACAGAGGTAGTTTCCACGACGGTGCAGGTCGCGACACGAAGGGGCTTCTTGCGGCGTGAGATCGTGCGATTATACCGATCCTAACAGAGTGAGATTTCAGGGTTACATAATGACCAAGAAGAAGAAACAAAATGGGGTTGTTGTTGGAGAGGGTGATGGTGTTGGTGGTGTTGTAGATTTGGAGTCTGTCATACACAACCACGCTCTTTTTTTCGACAAGTTGATTGAATTGATTCCCGCCAAGTTCTATCTGCCAACTGATGACAAGGAGAAGCCATGGTTTCAGGGTCTAAACAAGGCTGCAAAAGCTAAGGCAAAGAAAGAGACCAAGGAGAATATCAAGAAGTCTCGGAGGGACCGTTTAGACCCTGACAAACCTTCTGCAACTACCCTTGACCTTCTCAAGGAAAGCTTTGGAAAAGAGAAGGTGGACCACAGTGACGTAGAGCAGGGTGCGGTGGCGGTTGCTAAGCCTCTTGTTTCTGGGATGATGAAAAGAGATGATGGGTCTGTGACATATGAAGAGCTTCAGCAAAGGCTTCGTCGCAGGCTCGAAGAGTTTCGTGCAGGTCGTAATACTGGGAATTCGGATAGGAAGAGGGAAGAAAGGAATGCTAGGAGAGGATATAAGGACAACAAACGCAAGAGGGATGGTGAAACTGAGGAAGGCAACCCTGTGCGTGGTGAATTGGCGGCGGCAGAGGAGAAAGTGAAGAAGGATGCTGCAGAGGCCTCCAAGGATCTTGTGTTTGGACATGTCAAACTTCAGAATGACGAAGGGAAAAAGAAGAGGAAGGTTTCAAAGCATCAGGAACTAGAAAGGGCTAAGAAATTGGAAGAAGTGAAGAAGAAAGATCCTGAGAAGGCTGAAGCTTTGCTAAAAAGCAATCATGGAAAGCAGCAATGGATAGAGCTTCAGGGGTTAAGGTGCATGATGATCCAAAACTGTTGCATAAAAGCATTCATAAAGAGAAGAAGAAACAGCTGAAGAATGCGGAGAAGTGGAAGGATAGAGTTCAAACTAGGGACCAGTTGAAGGCAGAGAAGCAGCAGAAAAGGTCCGAGAATATAGCTTCGAGGATTCGTGAGAAGAAAATGCGGAAAATTGCCAAAAGGGAGAAAAAACTTATGCGGCCCGGCTTTGAAGGTCGCAAAGAAGGTTTTATGAATGATGGTGGGTCCAGCTAAAATGGGTTTTTGAGTTTATTGATTTTGGCTTTTCATTTCATTGTTATTATGCTGCATTTGAAGAGTTAGTGTTAGAGAAAGACAATTCAAGGGTTTGAAAGATGCACCTATTAATTTCTCTGTTTCACTATATTTCTTAAACTGAATATAAACTTTCTCAGGCTCCGTTTCCAATTTTTGATTTCAACAATCTCAATCTTAATATATAGCTTTTGATTTCATGTAG

Coding sequences of Glyma19g22310

Limit To All Plant Sequences

>Glyma19g22310.1   sequence type=CDS   gene model=Glyma19g22310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAAGAAGAAGAAACAAAATGGGGTTGTTGTTGGAGAGGGTGATGGTGTTGGTGGTGTTGTAGATTTGGAGTCTGTCATACACAACCACGCTCTTTTTTTCGACAAGTTGATTGAATTGATTCCCGCCAAGTTCTATCTGCCAACTGATGACAAGGAGAAGCCATGGTTTCAGGGTCTAAACAAGGCTGCAAAAGCTAAGGCAAAGAAAGAGACCAAGGAGAATATCAAGAAGTCTCGGAGGGACCGTTTAGACCCTGACAAACCTTCTGCAACTACCCTTGACCTTCTCAAGGAAAGCTTTGGAAAAGAGAAGGTGGACCACAGTGACGTAGAGCAGGGTGCGGTGGCGGTTGCTAAGCCTCTTGTTTCTGGGATGATGAAAAGAGATGATGGGTCTGTGACATATGAAGAGCTTCAGCAAAGGCTTCGTCGCAGGCTCGAAGAGTTTCGTGCAGGTCGTAATACTGGGAATTCGGATAGGAAGAGGGAAGAAAGGAATGCTAGGAGAGGATATAAGGACAACAAACGCAAGAGGGATGGTGAAACTGAGGAAGGCAACCCTGTGCGTGGTGAATTGGCGGCGGCAGAGGAGAAAGTGAAGAAGGATGCTGCAGAGGCCTCCAAGGATCTTGTGTTTGGACATGTCAAACTTCAGAATGACGAAGGGAAAAAGAAGAGGAAGGTTTCAAAGCATCAGGAACTAGAAAGGGCTAAGAAATTGGAAGAACAATCATGGAAAGCAGCAATGGATAGAGCTTCAGGGGTTAAGGTGCATGATGATCCAAAACTGTTGCATAAAAGCATTCATAAAGAGAAGAAGAAACAGCTGAAGAATGCGGAGAAGTGGAAGGATAGAGTTCAAACTAGGGACCAGTTGAAGGCAGAGAAGCAGCAGAAAAGGTCCGAGAATATAGCTTCGAGGATTCGTGAGAAGAAAATGCGGAAAATTGCCAAAAGGGAGAAAAAACTTATGCGGCCCGGCTTTGAAGGTCGCAAAGAAGGTTTTATGAATGATGGTGGGTCCAGCTAA

>Glyma19g22310.2   sequence type=CDS   gene model=Glyma19g22310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAAGAAGAAGAAACAAAATGGGGTTGTTGTTGGAGAGGGTGATGGTGTTGGTGGTGTTGTAGATTTGGAGTCTGTCATACACAACCACGCTCTTTTTTTCGACAAGTTGATTGAATTGATTCCCGCCAAGTTCTATCTGCCAACTGATGACAAGGAGAAGCCATGGTTTCAGGGTCTAAACAAGGCTGCAAAAGCTAAGGCAAAGAAAGAGACCAAGGAGAATATCAAGAAGTCTCGGAGGGACCGTTTAGACCCTGACAAACCTTCTGCAACTACCCTTGACCTTCTCAAGGAAAGCTTTGGAAAAGAGAAGGTGGACCACAGTGACGTAGAGCAGGGTGCGGTGGCGGTTGCTAAGCCTCTTGTTTCTGGGATGATGAAAAGAGATGATGGGTCTGTGACATATGAAGAGCTTCAGCAAAGGCTTCGTCGCAGGCTCGAAGAGTTTCGTGCAGGTCGTAATACTGGGAATTCGGATAGGAAGAGGGAAGAAAGGAATGCTAGGAGAGGATATAAGGACAACAAACGCAAGAGGGATGGTGAAACTGAGGAAGGCAACCCTGTGCGTGGTGAATTGGCGGCGGCAGAGGAGAAAGTGAAGAAGGATGCTGCAGAGGCCTCCAAGGATCTTGTGTTTGGACATGTCAAACTTCAGAATGACGAAGGGAAAAAGAAGAGGAAGGTTTCAAAGCATCAGGAACTAGAAAGGGCTAAGAAATTGGAAGAAGTGAAGAAGAAAGATCCTGAGAAGGCTGAAGCTTTGCTAAAAAGCAATCATGGAAAGCAGCAATGGATAGAGCTTCAGGGGTTAAGGTGCATGATGATCCAAAACTGTTGCATAAAAGCATTCATAAAGAGAAGAAGAAACAGCTGA

Predicted protein sequences of Glyma19g22310

Limit To All Plant Sequences

>Glyma19g22310.1   sequence type=predicted peptide   gene model=Glyma19g22310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKKKKQNGVVVGEGDGVGGVVDLESVIHNHALFFDKLIELIPAKFYLPTDDKEKPWFQGLNKAAKAKAKKETKENIKKSRRDRLDPDKPSATTLDLLKESFGKEKVDHSDVEQGAVAVAKPLVSGMMKRDDGSVTYEELQQRLRRRLEEFRAGRNTGNSDRKREERNARRGYKDNKRKRDGETEEGNPVRGELAAAEEKVKKDAAEASKDLVFGHVKLQNDEGKKKRKVSKHQELERAKKLEEQSWKAAMDRASGVKVHDDPKLLHKSIHKEKKKQLKNAEKWKDRVQTRDQLKAEKQQKRSENIASRIREKKMRKIAKREKKLMRPGFEGRKEGFMNDGGSS*

>Glyma19g22310.2   sequence type=predicted peptide   gene model=Glyma19g22310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKKKKQNGVVVGEGDGVGGVVDLESVIHNHALFFDKLIELIPAKFYLPTDDKEKPWFQGLNKAAKAKAKKETKENIKKSRRDRLDPDKPSATTLDLLKESFGKEKVDHSDVEQGAVAVAKPLVSGMMKRDDGSVTYEELQQRLRRRLEEFRAGRNTGNSDRKREERNARRGYKDNKRKRDGETEEGNPVRGELAAAEEKVKKDAAEASKDLVFGHVKLQNDEGKKKRKVSKHQELERAKKLEEVKKKDPEKAEALLKSNHGKQQWIELQGLRCMMIQNCCIKAFIKRRRNS*

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