Glyma19g22210 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g22210

Feature Type:	gene_model
Chromosome:	Gm19
Start:	26726950
stop:	26729192
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g22210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF02451	PFAM	Nodulin	JGI		ISS
UniRef100_I1N7D0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7D0_SOYBN	SoyBase	E_val: 5.00E-160	ISS
UniRef100_P08863	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin-26B n=2 Tax=Glycine max RepID=NO26B_SOYBN	SoyBase	E_val: 2.00E-122	ISS

Expression Patterns of Glyma19g22210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g22210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g074000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g22210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g22210

Limit To All Plant Sequences

>Glyma19g22210.2   sequence type=transcript   gene model=Glyma19g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATGGGGTCGGCTACATGGATCAACTTCCGCCATAATGTTCTATCAACTGCAACAGTTGCAGAAGATGCTGATAATATTGGTGAAGCCATTATTCCCGAGAACCCTAAATTCAAAAAGTTTGTGACAGATTGCACATCGCATGTTGCTGAAAGATGTAGTAGTGGAAGCGAAGCATTGCATGGCGAGGGAGGGTTGGCTCTTTGCCTTTTCGATTCTATGGAAAATTGCTTGGTAGAGCATGGAGCGGCCAAAGTTAACCAACGATCATTATTCGTGCTACCAAAAGGATCCACACCCATTGAACCAAAAGATTCATTACCTTCATTTATTCCATCACCACCCATACCTCCCAAGTCCAAATTTGAATGTTGGTGTGAAAGTTTAATATCTTGTGTGTGTACTTGGACGTCCATGGTGCCGAGTACAAGGTTATTAAATAACCAACAATTAGGTCAAGGTTTCTATTATTTCCAATATGAGCCACTCCTACAATTCAGAACCGTCTTGAGAACATGTTCTCTGGAAAGTGCAAGGACTTGTCTCAATGCTCCTAATGTTGCTACATCACCTTTAGCCGCTTGTCTCATTCCATCCATGAATCAATGTGTCTATCCCAGTGGAGCTGAATCCGGTACTGGTAGCCTACCTATTAAGGCGTAAAATTATCTTGTGCATAAAGGCAAATATACTGGAAGTACTTGCAATAGTAGAAGAATAACTGAGTTAGATCAGCCTATTGGCTTCCAGGCTAGCTAGCTTGTTTTATGAATAAAGCTACATCACTGAATGTCATGATCCATATTGGCGTTCCTACGTACTAATAAATAAAAAGTAATAAGACATGCTTTACTTCTTTTTTTTACAGAAAAAATATGATTTACTTCTATTTCTCATGTTTAAAAACTCTTTTTTATATTACAATTTAATATTTTGTATCAAATATATCGGGCAATTTTATATGTAGATCTTCCTAAAAC

>Glyma19g22210.3   sequence type=transcript   gene model=Glyma19g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATTCTCTTATGTTTAGATTGCAAAATTCACATATTTTATTAGTATGAATACATGAAAACTAATCAAATTGAGCTCAAATTAAATAAGGTGAAAAATAGTACAATTCACGGCTAGAAAAATCAACTGTATAATGGAGAAAATGGGAGTGATGCTAATTACTCTATTCCTCTTTATAGCTGCAACAGTTGCAGAAGATGCTGATAATATTGGTGAAGCCATTATTCCCGAGAACCCTAAATTCAAAAAGTTTGTGACAGATTGCACATCGCATGTTGCTGAAAGATGTAGTAGTGGAAGCGAAGCATTGCATGGCGAGGGAGGGTTGGCTCTTTGCCTTTTCGATTCTATGGAAAATTGCTTGGTAGAGCATGGAGCGGCCAAAGTTAACCAACGATCATTATTCGTGCTACCAAAAGGATCCACACCCATTGAACCAAAAGATTCATTACCTTCATTTATTCCATCACCACCCATACCTCCCAAGTCCAAATTTGAATGTTGGTGTGAAAGTTTAATATCTTGTGTGTGTACTTGGACGTCCATGGTGCCGAGTACAAGGTTATTAAATAACCAACAATTAGGTCAAGGTTTCTATTATTTCCAATATGAGCCACTCCTACAATTCAGAACCGTCTTGAGAACATGTTCTCTGGAAAGTGCAAGGACTTGTCTCAATGCTCCTAATGTTGCTACATCACCTTTAGCCGCTTGTCTCATTCCATCCATGAATCAATGTGTCTATCCCAGTGGAGCTGAATCCGGTAGCCTACCTATTAAGGCGTAAAATTATCTTGTGCATAAAGGCAAATATACTGGAAGTACTTGCAATAGTAGAAGAATAACTGAGTTAGATCAGCCTATTGGCTTCCAGGCTAGCTAGCTTGTTTTATGAATAAAGCTACATCACTGAATGTCATGATCCATATTGGCGTTCCTACGTACTAATAAATAAAAAGTAATAAGACATGCTTTACTTCTTTTTTTTACAGAAAAAATATGATTTACTTCTATTTCTCATGTTTAAAAACTCTTTTTTATATTACAATTTAATATTTTGTATCAAATATATCGGGCAATTTTATATGTAGATCTTCCTAAAAC

Coding sequences of Glyma19g22210

Limit To All Plant Sequences

>Glyma19g22210.1   sequence type=CDS   gene model=Glyma19g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAAATGGGAGTGATGCTAATTACTCTATTCCTCTTTATAGCTGCAACAGTTGCAGAAGATGCTGATAATATTGGTGAAGCCATTATTCCCGAGAACCCTAAATTCAAAAAGTTTGTGACAGATTGCACATCGCATGTTGCTGAAAGATGTAGTAGTGGAAGCGAAGCATTGCATGGCGAGGGAGGGTTGGCTCTTTGCCTTTTCGATTCTATGGAAAATTGCTTGGTAGAGCATGGAGCGGCCAAAGTTAACCAACGATCATTATTCGTGCTACCAAAAGGATCCACACCCATTGAACCAAAAGATTCATTACCTTCATTTATTCCATCACCACCCATACCTCCCAAGTCCAAATTTGAATGTTGGTGTGAAAGTTTAATATCTTGTGTGTGTACTTGGACGTCCATGGTGCCGAGTACAAGGTTATTAAATAACCAACAATTAGGTCAAGGTTTCTATTATTTCCAATATGAGCCACTCCTACAATTCAGAACCGTCTTGAGAACATGTTCTCTGGAAAGTGCAAGGACTTGTCTCAATGCTCCTAATGTTGCTACATCACCTTTAGCCGCTTGTCTCATTCCATCCATGAATCAATGTGTCTATCCCAGTGGAGCTGAATCCGGTACTGGTAGCCTACCTATTAAGGCGTAA

>Glyma19g22210.2   sequence type=CDS   gene model=Glyma19g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCGGCTACATGGATCAACTTCCGCCATAATGTTCTATCAACTGCAACAGTTGCAGAAGATGCTGATAATATTGGTGAAGCCATTATTCCCGAGAACCCTAAATTCAAAAAGTTTGTGACAGATTGCACATCGCATGTTGCTGAAAGATGTAGTAGTGGAAGCGAAGCATTGCATGGCGAGGGAGGGTTGGCTCTTTGCCTTTTCGATTCTATGGAAAATTGCTTGGTAGAGCATGGAGCGGCCAAAGTTAACCAACGATCATTATTCGTGCTACCAAAAGGATCCACACCCATTGAACCAAAAGATTCATTACCTTCATTTATTCCATCACCACCCATACCTCCCAAGTCCAAATTTGAATGTTGGTGTGAAAGTTTAATATCTTGTGTGTGTACTTGGACGTCCATGGTGCCGAGTACAAGGTTATTAAATAACCAACAATTAGGTCAAGGTTTCTATTATTTCCAATATGAGCCACTCCTACAATTCAGAACCGTCTTGAGAACATGTTCTCTGGAAAGTGCAAGGACTTGTCTCAATGCTCCTAATGTTGCTACATCACCTTTAGCCGCTTGTCTCATTCCATCCATGAATCAATGTGTCTATCCCAGTGGAGCTGAATCCGGTACTGGTAGCCTACCTATTAAGGCGTAA

>Glyma19g22210.3   sequence type=CDS   gene model=Glyma19g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAAATGGGAGTGATGCTAATTACTCTATTCCTCTTTATAGCTGCAACAGTTGCAGAAGATGCTGATAATATTGGTGAAGCCATTATTCCCGAGAACCCTAAATTCAAAAAGTTTGTGACAGATTGCACATCGCATGTTGCTGAAAGATGTAGTAGTGGAAGCGAAGCATTGCATGGCGAGGGAGGGTTGGCTCTTTGCCTTTTCGATTCTATGGAAAATTGCTTGGTAGAGCATGGAGCGGCCAAAGTTAACCAACGATCATTATTCGTGCTACCAAAAGGATCCACACCCATTGAACCAAAAGATTCATTACCTTCATTTATTCCATCACCACCCATACCTCCCAAGTCCAAATTTGAATGTTGGTGTGAAAGTTTAATATCTTGTGTGTGTACTTGGACGTCCATGGTGCCGAGTACAAGGTTATTAAATAACCAACAATTAGGTCAAGGTTTCTATTATTTCCAATATGAGCCACTCCTACAATTCAGAACCGTCTTGAGAACATGTTCTCTGGAAAGTGCAAGGACTTGTCTCAATGCTCCTAATGTTGCTACATCACCTTTAGCCGCTTGTCTCATTCCATCCATGAATCAATGTGTCTATCCCAGTGGAGCTGAATCCGGTAGCCTACCTATTAAGGCGTAA

Predicted protein sequences of Glyma19g22210

Limit To All Plant Sequences

>Glyma19g22210.1   sequence type=predicted peptide   gene model=Glyma19g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKMGVMLITLFLFIAATVAEDADNIGEAIIPENPKFKKFVTDCTSHVAERCSSGSEALHGEGGLALCLFDSMENCLVEHGAAKVNQRSLFVLPKGSTPIEPKDSLPSFIPSPPIPPKSKFECWCESLISCVCTWTSMVPSTRLLNNQQLGQGFYYFQYEPLLQFRTVLRTCSLESARTCLNAPNVATSPLAACLIPSMNQCVYPSGAESGTGSLPIKA*

>Glyma19g22210.2   sequence type=predicted peptide   gene model=Glyma19g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSATWINFRHNVLSTATVAEDADNIGEAIIPENPKFKKFVTDCTSHVAERCSSGSEALHGEGGLALCLFDSMENCLVEHGAAKVNQRSLFVLPKGSTPIEPKDSLPSFIPSPPIPPKSKFECWCESLISCVCTWTSMVPSTRLLNNQQLGQGFYYFQYEPLLQFRTVLRTCSLESARTCLNAPNVATSPLAACLIPSMNQCVYPSGAESGTGSLPIKA*

>Glyma19g22210.3   sequence type=predicted peptide   gene model=Glyma19g22210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKMGVMLITLFLFIAATVAEDADNIGEAIIPENPKFKKFVTDCTSHVAERCSSGSEALHGEGGLALCLFDSMENCLVEHGAAKVNQRSLFVLPKGSTPIEPKDSLPSFIPSPPIPPKSKFECWCESLISCVCTWTSMVPSTRLLNNQQLGQGFYYFQYEPLLQFRTVLRTCSLESARTCLNAPNVATSPLAACLIPSMNQCVYPSGAESGSLPIKA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain