Glyma19g21400 - SoyBase

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Report for Sequence Feature Glyma19g21400

Feature Type:	gene_model
Chromosome:	Gm19
Start:	25798136
stop:	25803103
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g21400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05080	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 22 \| chr5:1498727-1499972 REVERSE LENGTH=251	SoyBase	E_val: 3.00E-127	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0423	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF24	Panther		JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_B9SCG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme e2S, putative n=1 Tax=Ricinus communis RepID=B9SCG2_RICCO	SoyBase	E_val: 5.00E-147	ISS
UniRef100_I1N7B5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N7B5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g21400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g21400 not represented in the dataset	Glyma19g21400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g21400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g072800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g21400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g21400

Limit To All Plant Sequences

>Glyma19g21400.2   sequence type=transcript   gene model=Glyma19g21400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCGATAATTCTCTTTCCCATACTCTCTCTGTGTTCTTCTGTTCTCTCTGTTTCTTCAGATTTTCTCCCTCCTCAGCGCCTGTGAAGATCCCTTTGCTGGTGTTTTTTCTGCAGTTTGATTGCTTCATTCTTTGAAGTGAATTTGACAATTAAGTAAATTGGTTGAGAAGGGTTCATTCCTCTTCATTGGAAGAATAAAACAAATATTGCAGGTGGATTTTTTCTGATGGCAACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTAGCCAAGGAATTAAAAAATATTGATGAATCACCTCCTGAGGGGATTAAAGTTGTGGTAAATGATGATGATTTTTCAATAATATATGCTGACATTGAAGGCCCAGCTGGAACTCCTTATGATAATGGAGTTTTCCGCATGAAGTTGTTATTGTCTCGTGATTTCCCTCACTCTCCTCCTAAAGGGTTTTTCCTTACAAAGATTTTCCATCCAAATATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAACCCTAACCTTGGGTTGCGTCATGTTCTCATTGTTGTTAGGTGTCTACTAATTGAGCCATTTCCAGAATCAGCTCTAAATGAACAGGCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCAGTTCTTAATGCTGAAGTCAAAACTGCACCATCGGGTGCGACATTGCCATTGCAATCACCATTGGCCCCCTCAACTAACAACACAACAAGAGGAAACAAGCAGGAACAGGCTGTGGTTGGAGCTGAGCCAGCTGTTAACAGTTCTTGTGCCACATCCATGGTTCATGCTGCTGCACCAATGAAGGCAGGTGGAGTAGCAAAAGCTCAGGCTGACAAGAAGAAGATTGATGCCCGGAAAAGAAGTTTGAAAAGATTGTAATGAAGTTGTTCAATAATTGAACTTATATCATTTGTGGGGTAATTTTGTTTATTGAAATAATAGAGAAAGGGGAAATGTGGTTGGGGTGTATGGGAAGATCAAAGATGGGTTCAAATGAATAATACTTTTGTTGGGACTAAATGAATGAAATTAAACTGTTGTATGTGCTCTACTGCTCTTGGGTTGATTTTTTTTTTTTATTTCTTTTTCCTTTTATTATATAATGTCACATTTAATAAGGGATCAAGGTAATATTCTGCCTTTTC

>Glyma19g21400.3   sequence type=transcript   gene model=Glyma19g21400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTAATTTTTTAATTATCAAGGGCATCGTTTCACCTTTTTCCATTTTAATTTTCATGAACAAATATAAATATTTCACTCCCCAAACTCCAGAGTCCCACCGATAATTCTCTTTCCCATACTCTCTCTGTGTTCTTCTGTTCTCTCTGTTTCTTCAGATTTTCTCCCTCCTCAGCGCCTGTGAAGGCAACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTAGCCAAGGAATTAAAAAATATTGATGAATCACCTCCTGAGGGGATTAAAGTTGTGGTAAATGATGATGATTTTTCAATAATATATGCTGACATTGAAGGCCCAGCTGGAACTCCTTATGATAATGGAGTTTTCCGCATGAAGTTGTTATTGTCTCGTGATTTCCCTCACTCTCCTCCTAAAGGGTTTTTCCTTACAAAGATTTTCCATCCAAATATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAACCCTAACCTTGGGTTGCGTCATGTTCTCATTGTTGTTAGGTGTCTACTAATTGAGCCATTTCCAGAATCAGCTCTAAATGAACAGGCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCAGTTCTTAATGCTGAAGTCAAAACTGCACCATCGGGTGCGACATTGCCATTGCAATCACCATTGGCCCCCTCAACTAACAACACAACAAGAGGAAACAAGCAGGAACAGGCTGTGGTTGGAGCTGAGCCAGCTGTTAACAGTTCTTGTGCCACATCCATGGTTCATGCTGCTGCACCAATGAAGGCAGGTGGAGTAGCAAAAGCTCAGGCTGACAAGAAGAAGATTGATGCCCGGAAAAGAAGTTTGAAAAGATTGTAATGAAGTTGTTCAATAATTGAACTTATATCATTTGTGGGGTAATTTTGTTTATTGAAATAATAGAGAAAGGGGAAATGTGGTTGGGGTGTATGGGAAGATCAAAGATGGGTTCAAATGAATAATACTTTTGTTGGGACTAAATGAATGAAATTAAACTGTTGTATGTGCTCTACTGCTCTTGGGTTGATTTTTTTTTTTTATTTCTTTTTCCTTTTATTATATAATGTCACATTTAATAAGGGATCAAGGTAATATTCTGCCTTTTCATGTGCACGAGTTTGAATAAGATTCCA

Coding sequences of Glyma19g21400

Limit To All Plant Sequences

>Glyma19g21400.1   sequence type=CDS   gene model=Glyma19g21400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTAGCCAAGGAATTAAAAAATATTGATGAATCACCTCCTGAGGGGATTAAAGTTGTGGTAAATGATGATGATTTTTCAATAATATATGCTGACATTGAAGGCCCAGCTGGAACTCCTTATGATAATGGAGTTTTCCGCATGAAGTTGTTATTGTCTCGTGATTTCCCTCACTCTCCTCCTAAAGGGTTTTTCCTTACAAAGATTTTCCATCCAAATATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAACCCTAACCTTGGGTTGCGTCATGTTCTCATTGTTGTTAGGTGTCTACTAATTGAGCCATTTCCAGAATCAGCTCTAAATGAACAGGCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCAGTTCTTAATGCTGAAGTCAAAACTGCACCATCGGGTGCGACATTGCCATTGCAATCACCATTGGCCCCCTCAACTAACAACACAACAAGAGGAAACAAGCAGGAACAGGCTGTGGTTGGAGCTGAGCCAGCTGTTAACAGTTCTTGTGCCACATCCATGGTTCATGCTGCTGCACCAATGAAGGCAGGTGGAGTAGCAAAAGCTCAGGCTGACAAGAAGAAGATTGATGCCCGGAAAAGAAGTTTGAAAAGATTGTAA

>Glyma19g21400.2   sequence type=CDS   gene model=Glyma19g21400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTAGCCAAGGAATTAAAAAATATTGATGAATCACCTCCTGAGGGGATTAAAGTTGTGGTAAATGATGATGATTTTTCAATAATATATGCTGACATTGAAGGCCCAGCTGGAACTCCTTATGATAATGGAGTTTTCCGCATGAAGTTGTTATTGTCTCGTGATTTCCCTCACTCTCCTCCTAAAGGGTTTTTCCTTACAAAGATTTTCCATCCAAATATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAACCCTAACCTTGGGTTGCGTCATGTTCTCATTGTTGTTAGGTGTCTACTAATTGAGCCATTTCCAGAATCAGCTCTAAATGAACAGGCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCAGTTCTTAATGCTGAAGTCAAAACTGCACCATCGGGTGCGACATTGCCATTGCAATCACCATTGGCCCCCTCAACTAACAACACAACAAGAGGAAACAAGCAGGAACAGGCTGTGGTTGGAGCTGAGCCAGCTGTTAACAGTTCTTGTGCCACATCCATGGTTCATGCTGCTGCACCAATGAAGGCAGGTGGAGTAGCAAAAGCTCAGGCTGACAAGAAGAAGATTGATGCCCGGAAAAGAAGTTTGAAAAGATTGTAA

>Glyma19g21400.3   sequence type=CDS   gene model=Glyma19g21400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTGTTATTGTCTCGTGATTTCCCTCACTCTCCTCCTAAAGGGTTTTTCCTTACAAAGATTTTCCATCCAAATATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAACCCTAACCTTGGGTTGCGTCATGTTCTCATTGTTGTTAGGTGTCTACTAATTGAGCCATTTCCAGAATCAGCTCTAAATGAACAGGCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCAGTTCTTAATGCTGAAGTCAAAACTGCACCATCGGGTGCGACATTGCCATTGCAATCACCATTGGCCCCCTCAACTAACAACACAACAAGAGGAAACAAGCAGGAACAGGCTGTGGTTGGAGCTGAGCCAGCTGTTAACAGTTCTTGTGCCACATCCATGGTTCATGCTGCTGCACCAATGAAGGCAGGTGGAGTAGCAAAAGCTCAGGCTGACAAGAAGAAGATTGATGCCCGGAAAAGAAGTTTGAAAAGATTGTAA

Predicted protein sequences of Glyma19g21400

Limit To All Plant Sequences

>Glyma19g21400.1   sequence type=predicted peptide   gene model=Glyma19g21400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNENLPPNVIKQLAKELKNIDESPPEGIKVVVNDDDFSIIYADIEGPAGTPYDNGVFRMKLLLSRDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPNLGLRHVLIVVRCLLIEPFPESALNEQAGKLLLENYEEYARHARLYTGIHAKPKSKFKTGAISESTTALNVDQSNTSVLNAEVKTAPSGATLPLQSPLAPSTNNTTRGNKQEQAVVGAEPAVNSSCATSMVHAAAPMKAGGVAKAQADKKKIDARKRSLKRL*

>Glyma19g21400.2   sequence type=predicted peptide   gene model=Glyma19g21400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNENLPPNVIKQLAKELKNIDESPPEGIKVVVNDDDFSIIYADIEGPAGTPYDNGVFRMKLLLSRDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPNLGLRHVLIVVRCLLIEPFPESALNEQAGKLLLENYEEYARHARLYTGIHAKPKSKFKTGAISESTTALNVDQSNTSVLNAEVKTAPSGATLPLQSPLAPSTNNTTRGNKQEQAVVGAEPAVNSSCATSMVHAAAPMKAGGVAKAQADKKKIDARKRSLKRL*

>Glyma19g21400.3   sequence type=predicted peptide   gene model=Glyma19g21400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLLSRDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPNLGLRHVLIVVRCLLIEPFPESALNEQAGKLLLENYEEYARHARLYTGIHAKPKSKFKTGAISESTTALNVDQSNTSVLNAEVKTAPSGATLPLQSPLAPSTNNTTRGNKQEQAVVGAEPAVNSSCATSMVHAAAPMKAGGVAKAQADKKKIDARKRSLKRL*

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