Glyma19g21046 - SoyBase

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Report for Sequence Feature Glyma19g21046

Feature Type:	gene_model
Chromosome:	Gm19
Start:	25243990
stop:	25278981
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g21046

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05310	AT	Annotation by Michelle Graham. TAIR10: TLC ATP/ADP transporter \| chr5:1571271-1574341 FORWARD LENGTH=496	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005471	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP:ADP antiporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PF03219	PFAM	TLC ATP/ADP transporter	JGI		ISS
UniRef100_I6UEH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plasma membrane ATP/ADP transporter TLC1 n=1 Tax=Beta vulgaris RepID=I6UEH5_BETVU	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EA5D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EA5D related cluster n=1 Tax=unknown RepID=UPI000233EA5D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g21046

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g21046 not represented in the dataset	Glyma19g21046 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g21046 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g067100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g21046

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g21046

Limit To All Plant Sequences

>Glyma19g21046.2   sequence type=transcript   gene model=Glyma19g21046   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTTTAGAATATTCCTTGTCGTTATAATCAAGATTTTGACCTGGGGGCTGGCTAACAATGCTTGGTGTGTCTCCAATCTCCATTTGCTCCGATTCGAAACGCAAACGCGATGGGAAGGTTTACGTTTGATGCAGTCGTCTCCTTGTTCGTTACGGTGCACCCGCACGAGACCTCTACTTTGCTCCATTCCTTCTTCTGCTTCTTCTTTATTTTGAGTGCGTATTTCGTAGTTCTTCCGTTGCGCGATGAGGGTGCCATCTCATTGGGGTTATCAAATCTGCCGGGTCTATTTGTGGGGTCCCTGGTGCTCACCCTCATTGCTGCACCCTTTTCTTCTCTCATATTCTCTCTACCTAACCTTTCCAAAGGCAAGGTTCTTTAGTGTATCCCTCATATTGTTCTTTATTCTATGGCACTCTTCATCAGCTGGATATTCAAAGTCCAATATCACAGGATCCACACCTTTGACCTTTCCCTCAAAGGAAGAAGGGAAAATTGGTGCCCATGGTAGTCTTACATCTTCATTTGGTTGGGATAACCATGGATGGTTCTATATTTCTGTCCGGATAGGATTGTTTCTTTGGGTTGCTTTGCTTAATCTAATTACAATTTCTTCAACTTGGGCAAGGGTAACTGATGTGATGGACAGTGAGTCAGGTTCAAGATTATTCGGGTTTATTGGTGCTGGTGCCACCCTTGGACAACTTTTTGGGTCATTGTTTGCCATTGGAATGGCTTTTGTTGGCCCATTCTTGCTTTTGTTTGCTGCGTTGTTGATGGAACTTGCGGCACAAACATCAAGAGGGATAAATCATGTTACATCTCATGTTGAAGAACAATTGTCTCCCATTAGAAAATCTGATTCCAAAAATGAAAACAAGACTGATGAGATTCAGAAGACTGAACATACTCCAAGAGGATTTCCAAAGTCATCTACTTTAGTGAAGCTTCCGTTTTGGCCCATACTTGAAGGACTCTGGCTTATATTGTCATCAACCTACCTTTTGCATGTGTCATTGTTCATCTGGCTGAGTGCAGTTGTCTCTTCATTCTTCTATTTTCAGAAAGTGAGCGTGATTGCCACTACAGTTACCAGCTCTCTTGGAAGAAGAAAATTGTTTGCCCAGATAAATAGCTTCATTGCTGTTTTTATTCTTGTTGGACAACTGTCCTTGACGGGACGCATTCTTACTGTTGCTGGGGTGACTACAGCTATATGCTCAGCACCTTTCGTTGGCCTCTTAAATTTAGTCGCTCTAGCTGTTTGGCCAAAATGGGTGGTGGTTGCCATTTGTGAGACGCTGAGAAAGGTTGTTACATATGTTGTGACAAGGCCTGGAAGAGAACTTTTGTTTACTGTTGTTTCAGAGGATGAGAAGTATAAAGCCAAAGTATGCATAGATGTCTTGGTTCAAAGACTTGGAGATGCTGCAGCAGCTGGAATGTACAAAATGCTTTTTGGTACTCTCAACGGGAACCCATCAACAGTTCCCCTTTATGGCCTCCCTGTTTGTTTGTTTTGGATAGTTACAGCATTCTCTTTGGGTCGTCGGCAAGTGCAACTTTCAAAGCACCAGATCTCCTCTACTTAATCATAGAATTTTAGATTAAATGTAATAGATTTTAATTATAATATTGGATGCCGTGCTTCTAGTCGAGAAAGTCGAGCATGAGATAACAAGCTAACACGGGTATGCTTTCCAAATTTTTCAAACAATTCCTTCGGTGTTGGCAATTTGAGTATGCAACCAAATATAAGATTGACTTGGTGAAGGGAGAAAAGGAGATGAGAGATTTTAAGTTCATTTTTGCTAACAAAAATGAATAAATTAATAACTAATATTTACTGATAAAAAATTAAAATAAAATTTGAGTAGGTGTGCTTGTGTTGAAAGGAGCTAGAAAAT

Coding sequences of Glyma19g21046

Limit To All Plant Sequences

>Glyma19g21046.1   sequence type=CDS   gene model=Glyma19g21046   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGTTTACGTTTGATGCAGTCGTCTCCTTGTTCGTTACGGTGCACCCGCACGAGACCTCTACTTTGCTCCATTCCTTCTTCTGCTTCTTCTTTATTTTGAGTGCGTATTTCGTAGTTCTTCCGTTGCGCGATGAGGGTGCCATCTCATTGGGGTTATCAAATCTGCCGGGTCTATTTGTGGGGTCCCTGGTGCTCACCCTCATTGCTGCACCCTTTTCTTCTCTCATATTCTCTCTACCTAACCTTTCCAAAGGCAAGGCTTTGTTTTTGATACACAGGTTCTTTAGTGTATCCCTCATATTGTTCTTTATTCTATGGCACTCTTCATCAGCTGGATATTCAAAGTCCAATATCACAGGATCCACACCTTTGACCTTTCCCTCAAAGGAAGAAGGGAAAATTGGTGCCCATGGTAGTCTTACATCTTCATTTGGTTGGGATAACCATGGATGGTTCTATATTTCTGTCCGGATAGGATTGTTTCTTTGGGTTGCTTTGCTTAATCTAATTACAATTTCTTCAACTTGGGCAAGGGTAACTGATGTGATGGACAGTGAGTCAGGTTCAAGATTATTCGGGTTTATTGGTGCTGGTGCCACCCTTGGACAACTTTTTGGGTCATTGTTTGCCATTGGAATGGCTTTTGTTGGCCCATTCTTGCTTTTGTTTGCTGCGTTGTTGATGGAACTTGCGGCACAAACATCAAGAGGGATAAATCATGTTACATCTCATGTTGAAGAACAATTGTCTCCCATTAGAAAATCTGATTCCAAAAATGAAAACAAGACTGATGAGATTCAGAAGACTGAACATACTCCAAGAGGATTTCCAAAGTCATCTACTTTAGTGAAGCTTCCGTTTTGGCCCATACTTGAAGGACTCTGGCTTATATTGTCATCAACCTACCTTTTGCATGTGTCATTGTTCATCTGGCTGAGTGCAGTTGTCTCTTCATTCTTCTATTTTCAGAAAGTGAGCGTGATTGCCACTACAGTTACCAGCTCTCTTGGAAGAAGAAAATTGTTTGCCCAGATAAATAGCTTCATTGCTGTTTTTATTCTTGTTGGACAACTGTCCTTGACGGGACGCATTCTTACTGTTGCTGGGGTGACTACAGCTATATGCTCAGCACCTTTCGTTGGCCTCTTAAATTTAGTCGCTCTAGCTGTTTGGCCAAAATGGGTGGTGGTTGCCATTTGTGAGACGCTGAGAAAGGTTGTTACATATGTTGTGACAAGGCCTGGAAGAGAACTTTTGTTTACTGTTGTTTCAGAGGATGAGAAGTATAAAGCCAAAGTATGCATAGATGTCTTGGTTCAAAGACTTGGAGATGCTGCAGCAGCTGGAATGTACAAAATGCTTTTTGGTACTCTCAACGGGAACCCATCAACAGTTCCCCTTTATGGCCTCCCTGTTTGTTTGTTTTGGATAGTTACAGCATTCTCTTTGGGTCGTCGGCAAGTGCAACTTTCAAAGCACCAGATCTCCTCTACTTAA

>Glyma19g21046.2   sequence type=CDS   gene model=Glyma19g21046   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGTGCCATCTCATTGGGGTTATCAAATCTGCCGGGTCTATTTGTGGGGTCCCTGGTGCTCACCCTCATTGCTGCACCCTTTTCTTCTCTCATATTCTCTCTACCTAACCTTTCCAAAGGCAAGGTTCTTTAGTGTATCCCTCATATTGTTCTTTATTCTATGGCACTCTTCATCAGCTGGATATTCAAAGTCCAATATCACAGGATCCACACCTTTGACCTTTCCCTCAAAGGAAGAAGGGAAAATTGGTGCCCATGGTAGTCTTACATCTTCATTTGGTTGGGATAACCATGGATGGTTCTATATTTCTGTCCGGATAGGATTGTTTCTTTGGGTTGCTTTGCTTAATCTAATTACAATTTCTTCAACTTGGGCAAGGGTAACTGATGTGATGGACAGTGAGTCAGGTTCAAGATTATTCGGGTTTATTGGTGCTGGTGCCACCCTTGGACAACTTTTTGGGTCATTGTTTGCCATTGGAATGGCTTTTGTTGGCCCATTCTTGCTTTTGTTTGCTGCGTTGTTGATGGAACTTGCGGCACAAACATCAAGAGGGATAAATCATGTTACATCTCATGTTGAAGAACAATTGTCTCCCATTAGAAAATCTGATTCCAAAAATGAAAACAAGACTGATGAGATTCAGAAGACTGAACATACTCCAAGAGGATTTCCAAAGTCATCTACTTTAGTGAAGCTTCCGTTTTGGCCCATACTTGAAGGACTCTGGCTTATATTGTCATCAACCTACCTTTTGCATGTGTCATTGTTCATCTGGCTGAGTGCAGTTGTCTCTTCATTCTTCTATTTTCAGAAAGTGAGCGTGATTGCCACTACAGTTACCAGCTCTCTTGGAAGAAGAAAATTGTTTGCCCAGATAAATAGCTTCATTGCTGTTTTTATTCTTGTTGGACAACTGTCCTTGACGGGACGCATTCTTACTGTTGCTGGGGTGACTACAGCTATATGCTCAGCACCTTTCGTTGGCCTCTTAAATTTAGTCGCTCTAGCTGTTTGGCCAAAATGGGTGGTGGTTGCCATTTGTGAGACGCTGAGAAAGGTTGTTACATATGTTGTGACAAGGCCTGGAAGAGAACTTTTGTTTACTGTTGTTTCAGAGGATGAGAAGTATAAAGCCAAAGTATGCATAGATGTCTTGGTTCAAAGACTTGGAGATGCTGCAGCAGCTGGAATGTACAAAATGCTTTTTGGTACTCTCAACGGGAACCCATCAACAGTTCCCCTTTATGGCCTCCCTGTTTGTTTGTTTTGGATAGTTACAGCATTCTCTTTGGGTCGTCGGCAAGTGCAACTTTCAAAGCACCAGATCTCCTCTACTTAA

Predicted protein sequences of Glyma19g21046

Limit To All Plant Sequences

>Glyma19g21046.1   sequence type=predicted peptide   gene model=Glyma19g21046   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRFTFDAVVSLFVTVHPHETSTLLHSFFCFFFILSAYFVVLPLRDEGAISLGLSNLPGLFVGSLVLTLIAAPFSSLIFSLPNLSKGKALFLIHRFFSVSLILFFILWHSSSAGYSKSNITGSTPLTFPSKEEGKIGAHGSLTSSFGWDNHGWFYISVRIGLFLWVALLNLITISSTWARVTDVMDSESGSRLFGFIGAGATLGQLFGSLFAIGMAFVGPFLLLFAALLMELAAQTSRGINHVTSHVEEQLSPIRKSDSKNENKTDEIQKTEHTPRGFPKSSTLVKLPFWPILEGLWLILSSTYLLHVSLFIWLSAVVSSFFYFQKVSVIATTVTSSLGRRKLFAQINSFIAVFILVGQLSLTGRILTVAGVTTAICSAPFVGLLNLVALAVWPKWVVVAICETLRKVVTYVVTRPGRELLFTVVSEDEKYKAKVCIDVLVQRLGDAAAAGMYKMLFGTLNGNPSTVPLYGLPVCLFWIVTAFSLGRRQVQLSKHQISST*

>Glyma19g21046.2   sequence type=predicted peptide   gene model=Glyma19g21046   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVPSHWGYQICRVYLWGPWCSPSLLHPFLLSYSLYLTFPKARFFSVSLILFFILWHSSSAGYSKSNITGSTPLTFPSKEEGKIGAHGSLTSSFGWDNHGWFYISVRIGLFLWVALLNLITISSTWARVTDVMDSESGSRLFGFIGAGATLGQLFGSLFAIGMAFVGPFLLLFAALLMELAAQTSRGINHVTSHVEEQLSPIRKSDSKNENKTDEIQKTEHTPRGFPKSSTLVKLPFWPILEGLWLILSSTYLLHVSLFIWLSAVVSSFFYFQKVSVIATTVTSSLGRRKLFAQINSFIAVFILVGQLSLTGRILTVAGVTTAICSAPFVGLLNLVALAVWPKWVVVAICETLRKVVTYVVTRPGRELLFTVVSEDEKYKAKVCIDVLVQRLGDAAAAGMYKMLFGTLNGNPSTVPLYGLPVCLFWIVTAFSLGRRQVQLSKHQISST*

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