SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27790 | AT | Annotation by Michelle Graham. TAIR10: Calcium-binding EF hand family protein | chr4:13850066-13851488 FORWARD LENGTH=345 | SoyBase | E_val: 3.00E-93 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG4223 | KOG | Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) | JGI | ISS | |
| PTHR10827 | Panther | CALMODULIN RELATED CALCIUM BINDING PROTEIN | JGI | ISS | |
| PTHR10827:SF13 | Panther | RETICULOCALBIN | JGI | ISS | |
| PF10591 | PFAM | Secreted protein acidic and rich in cysteine Ca binding region | JGI | ISS | |
| UniRef100_G7I3F9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calumenin-B n=1 Tax=Medicago truncatula RepID=G7I3F9_MEDTR | SoyBase | E_val: 2.00E-167 | ISS |
| UniRef100_I1MAC0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAC0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g20970 not represented in the dataset |
Glyma19g20970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g067200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g20970.2 sequence type=transcript gene model=Glyma19g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCAACCTTCAATAACCTATTTTCCCTCTCATTCTTCTCTGGATATTTTTCTTTATCCCCTCTCCATAACTTCTTCTTCTTTGAGCCTCAAAACTCAATAAGCACCTGAAGATGTCAAAGGCGGTGGTTTATATCCTAATAGCCACCGCCGTGTTGTTCTTCATATTCATGTCCCCATTGAATCTCCAGAAGCCAAAGGGTCGTCCTAATCGCAGGTTTGGGTACAAACTACTTGAGCGAGCACCGAATTTGGACCCTCTTGTGACAAATATCGAGAAAGAGATTGAAAAGAAAATGTATCATGAACCTGCTCCTCGTATGTTGTCCAATTTGGATAGCACCACATCGGTTAGTGATGTTATAGAGACATACCAATATCTTACCTCGGGTGGTAAATTGAACACGACGTTACGTTTGATCATTTTGTTCCCTTTGTTAGATAGAGAACCGAAAGATGGGGTGATTGGTTTCAATGAGTTAGAGGCGTGGATTACTCAACGAGCAATAGAGAGATTAGATTATCTCACGCAAGTTGAGTTGGATTCCAAAGACAAGAACGGGGATTTGGCCATCTCGTTTAAGGAGTATTTACCTCAGTTTTCTGAAAAGGATATGGAGAAAAAAGAAATGGGATATGGCGAAGCAGGATGGTGGATGGAAAGATTTGAAGTTGCAGACATTGATCACAATAGGCTTCTGAACTTCACCGAACTTAAAGATTTTTTACACCCCGAAGATAGCAAAAATCAAGAAATGTTGAAATGGATGTTGAAAGATAGACTAATGCGCATGGACAATGGAAATGATGGGAAACTAAACTTCAATGAATTTGAAGGCCGTCTATATAGTACATATGAAAGTTATATGAACTTTGAAATTAATGGAGGACATGTACCTTCTCCAAAAGATAAATTTGTTAAGCTTGATGTGAACAAAGACAAATTTTTGTCACCAGAAGAATTGATACCGATACTTTCTTATCTGTATCCGGGAGAGGAAGCTTATGCTAAATATTTCACATGTTACTTAATGAATGAGGCTGATGATAATGGAGATGGAAAGTTGACACTCCAAGAGATGCTTGATCATGAGTTTACTTTCTACAACACAGTTCATGCAGATGGTCACCAAGAAAGTGATGATGATCATGATGAGCTTTGATGTATGAACCTAGTTACCAGAAAAGTCTAACGTTAACATATAAATGAAGTAGTGATCTAGTTGTTTTGCTTAATTATTTTGGTTTTGTAAAATATAGAAGTCAAACAAATTCTAATATAGAAGTCATACATTTAACTAAAATTATACTTGTATCAGTCATTTTGTATTTTTATTATATTAGTGTACATCTTTAATTGGAAGTCAA
>Glyma19g20970.1 sequence type=CDS gene model=Glyma19g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAAGGCGGTGGTTTATATCCTAATAGCCACCGCCGTGTTGTTCTTCATATTCATGTCCCCATTGAATCTCCAGAAGCCAAAGGGTCGTCCTAATCGCAGGTTTGGGTACAAACTACTTGAGCGAGCACCGAATTTGGACCCTCTTGTGACAAATATCGAGAAAGAGATTGAAAAGAAAATGTATCATGAACCTGCTCCTCGTATGTTGTCCAATTTGGATAGCACCACATCGGTTAGTGATGTTATAGAGACATACCAATATCTTACCTCGGGTGGTAAATTGAACACGACGTTACGTTTGATCATTTTGTTCCCTTTGTTAGATAGAGAACCGAAAGATGGGGTGATTGGTTTCAATGAGTTAGAGGCGTGGATTACTCAACGAGCAATAGAGAGATTAGATTATCTCACGCAAGTTGAGTTGGATTCCAAAGACAAGAACGGGGATTTGGCCATCTCGTTTAAGGAGTATTTACCTCAGTTTTCTGAAAAGGATATGGAGAAAAAAGAAATGGGATATGGCGAAGCAGGATGGTGGATGGAAAGATTTGAAGTTGCAGACATTGATCACAATAGGCTTCTGAACTTCACCGAACTTAAAGATTTTTTACACCCCGAAGATAGCAAAAATCAAGAAATGTTGAAATGGATGTTGAAAGATAGACTAATGCGCATGGACAATGGAAATGATGGGAAACTAAACTTCAATGAATTTGAAGGCCGTCTATATAGTACATATGAAAGTTATATGAACTTTGAAATTAATGGAGGACATGTACCTTCTCCAAAAGATAAATTTGTTAAGCTTGATGTGAACAAAGACAAATTTTTGTCACCAGAAGAATTGATACCGATACTTTCTTATCTGTATCCGGGAGAGGAAGCTTATGCTAAATATTTCACATGTTACTTAATGAATGAGGCTGATGATAATGGAGATGGAAAGTTGACACTCTTCCCTTATCTCATTTATTTTGTTGCAATCAATTTTGTCTTGTATGTTTAA >Glyma19g20970.2 sequence type=CDS gene model=Glyma19g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAAGGCGGTGGTTTATATCCTAATAGCCACCGCCGTGTTGTTCTTCATATTCATGTCCCCATTGAATCTCCAGAAGCCAAAGGGTCGTCCTAATCGCAGGTTTGGGTACAAACTACTTGAGCGAGCACCGAATTTGGACCCTCTTGTGACAAATATCGAGAAAGAGATTGAAAAGAAAATGTATCATGAACCTGCTCCTCGTATGTTGTCCAATTTGGATAGCACCACATCGGTTAGTGATGTTATAGAGACATACCAATATCTTACCTCGGGTGGTAAATTGAACACGACGTTACGTTTGATCATTTTGTTCCCTTTGTTAGATAGAGAACCGAAAGATGGGGTGATTGGTTTCAATGAGTTAGAGGCGTGGATTACTCAACGAGCAATAGAGAGATTAGATTATCTCACGCAAGTTGAGTTGGATTCCAAAGACAAGAACGGGGATTTGGCCATCTCGTTTAAGGAGTATTTACCTCAGTTTTCTGAAAAGGATATGGAGAAAAAAGAAATGGGATATGGCGAAGCAGGATGGTGGATGGAAAGATTTGAAGTTGCAGACATTGATCACAATAGGCTTCTGAACTTCACCGAACTTAAAGATTTTTTACACCCCGAAGATAGCAAAAATCAAGAAATGTTGAAATGGATGTTGAAAGATAGACTAATGCGCATGGACAATGGAAATGATGGGAAACTAAACTTCAATGAATTTGAAGGCCGTCTATATAGTACATATGAAAGTTATATGAACTTTGAAATTAATGGAGGACATGTACCTTCTCCAAAAGATAAATTTGTTAAGCTTGATGTGAACAAAGACAAATTTTTGTCACCAGAAGAATTGATACCGATACTTTCTTATCTGTATCCGGGAGAGGAAGCTTATGCTAAATATTTCACATGTTACTTAATGAATGAGGCTGATGATAATGGAGATGGAAAGTTGACACTCCAAGAGATGCTTGATCATGAGTTTACTTTCTACAACACAGTTCATGCAGATGGTCACCAAGAAAGTGATGATGATCATGATGAGCTTTGA
>Glyma19g20970.1 sequence type=predicted peptide gene model=Glyma19g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKAVVYILIATAVLFFIFMSPLNLQKPKGRPNRRFGYKLLERAPNLDPLVTNIEKEIEKKMYHEPAPRMLSNLDSTTSVSDVIETYQYLTSGGKLNTTLRLIILFPLLDREPKDGVIGFNELEAWITQRAIERLDYLTQVELDSKDKNGDLAISFKEYLPQFSEKDMEKKEMGYGEAGWWMERFEVADIDHNRLLNFTELKDFLHPEDSKNQEMLKWMLKDRLMRMDNGNDGKLNFNEFEGRLYSTYESYMNFEINGGHVPSPKDKFVKLDVNKDKFLSPEELIPILSYLYPGEEAYAKYFTCYLMNEADDNGDGKLTLFPYLIYFVAINFVLYV* >Glyma19g20970.2 sequence type=predicted peptide gene model=Glyma19g20970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKAVVYILIATAVLFFIFMSPLNLQKPKGRPNRRFGYKLLERAPNLDPLVTNIEKEIEKKMYHEPAPRMLSNLDSTTSVSDVIETYQYLTSGGKLNTTLRLIILFPLLDREPKDGVIGFNELEAWITQRAIERLDYLTQVELDSKDKNGDLAISFKEYLPQFSEKDMEKKEMGYGEAGWWMERFEVADIDHNRLLNFTELKDFLHPEDSKNQEMLKWMLKDRLMRMDNGNDGKLNFNEFEGRLYSTYESYMNFEINGGHVPSPKDKFVKLDVNKDKFLSPEELIPILSYLYPGEEAYAKYFTCYLMNEADDNGDGKLTLQEMLDHEFTFYNTVHADGHQESDDDHDEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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