SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70790 | AT | Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:26700724-26702127 FORWARD LENGTH=185 | SoyBase | E_val: 2.00E-74 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1030 | KOG | Predicted Ca2+-dependent phospholipid-binding protein | JGI | ISS | |
| PTHR23180 | Panther | CENTAURIN/ARF-RELATED | JGI | ISS | |
| PTHR23180:SF5 | Panther | JGI | ISS | ||
| PTHR26357 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR26357:SF5 | Panther | CENTAURIN/ARF | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| UniRef100_G7I9Z6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein AGD12 n=1 Tax=Medicago truncatula RepID=G7I9Z6_MEDTR | SoyBase | E_val: 6.00E-89 | ISS |
| UniRef100_I1N7A5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N7A5_SOYBN | SoyBase | E_val: 1.00E-121 | ISS |
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Glyma19g19260 not represented in the dataset |
Glyma19g19260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g070700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g19260.2 sequence type=transcript gene model=Glyma19g19260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTAATAAATAACAAAAAAGTATATAAACATGTTTAAGGGTAAAAATGCGTGTATGTAGCTATCTAATAATAAAAGACTATCTTTAGATTCGTTTGGAGCAAGAGTTTATAGACAATCTCTTCTCTCGGCGATGACAAAGTTGTGTTTCAATGGACAATAATAATATTCTGGGTCTTCTCAAGCTTCGAATTAAAAGAGGCATTAATCTTGCCATTCGCGATGCTCGTGCCAGCGATCCTTATGTCGTTGTCAACATGGGCGATCAGACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCAGAGATAGACTTAAAACCATATGTTCAGTGTAAGCAGATGGGATTGGGTAAGCTCCCAAATGGTTGTTCACTCAAGAGGATCCAGCCAGATAGAACTAATTACCTTGCTGAAGAGAGCAGCTGCATTTGGCAAAATGGAAAGATTGTCCAAGAAATGTTTTTGAGATTGAGAAATGTTGAGAGTGGGGAGATACTTGTGGAAATTGAGTGGGTTGATGTTGTTGGTTGCAGGGGCTTATCACAGGTAGAACTTTAAGTGTGCTTCCACCCTTATGTTATATGAAGCATTGAAAGCTTAGATGCCAACTCCAGGTTAATGCAATGTGGTACATTAATAATGTTTTGTGATGTAACCTGTGATACTAGTGTTGAATGTGTAATCCTAAGTTGAAACTAGCTTTTGTACTTTATCTTGTGAAGTGAGACATAAGTAATTAGTAACTTCTTGAAATATTTATGTAGGGGAATTGATCTTTATTTTTTTTTCATTAAGATATTATACTATTGATGTGAAATTCC
>Glyma19g19260.1 sequence type=CDS gene model=Glyma19g19260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACAATAATAATATTCTGGGTCTTCTCAAGCTTCGAATTAAAAGAGGCATTAATCTTGCCATTCGCGATGCTCGTGCCAGCGATCCTTATGTCGTTGTCAACATGGGCGATCAGAAGCTGAAGACTCGTGTCATAAAAAAAAACTGCAATCCTGACTGGAATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCAGAGATAGACTTAAAACCATATGTTCAGTGTAAGCAGATGGGATTGGGTAAGCTCCCAAATGGTTGTTCACTCAAGAGGATCCAGCCAGATAGAACTAATTACCTTGCTGAAGAGAGCAGCTGCATTTGGCAAAATGGAAAGATTGTCCAAGAAATGTTTTTGAGATTGAGAAATGTTGAGAGTGGGGAGATACTTGTGGAAATTGAGTGGGTTGATGTTGTTGGTTGCAGGGGCTTATCACAGGTAGAACTTTAA >Glyma19g19260.2 sequence type=CDS gene model=Glyma19g19260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACAATAATAATATTCTGGGTCTTCTCAAGCTTCGAATTAAAAGAGGCATTAATCTTGCCATTCGCGATGCTCGTGCCAGCGATCCTTATGTCGTTGTCAACATGGGCGATCAGACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCAGAGATAGACTTAAAACCATATGTTCAGTGTAAGCAGATGGGATTGGGTAAGCTCCCAAATGGTTGTTCACTCAAGAGGATCCAGCCAGATAGAACTAATTACCTTGCTGAAGAGAGCAGCTGCATTTGGCAAAATGGAAAGATTGTCCAAGAAATGTTTTTGAGATTGAGAAATGTTGAGAGTGGGGAGATACTTGTGGAAATTGAGTGGGTTGATGTTGTTGGTTGCAGGGGCTTATCACAGGTAGAACTTTAA
>Glyma19g19260.1 sequence type=predicted peptide gene model=Glyma19g19260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDNNNILGLLKLRIKRGINLAIRDARASDPYVVVNMGDQKLKTRVIKKNCNPDWNEELTLSVKDIKTPIHLTVYDKDTFSVDDKMGEAEIDLKPYVQCKQMGLGKLPNGCSLKRIQPDRTNYLAEESSCIWQNGKIVQEMFLRLRNVESGEILVEIEWVDVVGCRGLSQVEL* >Glyma19g19260.2 sequence type=predicted peptide gene model=Glyma19g19260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDNNNILGLLKLRIKRGINLAIRDARASDPYVVVNMGDQTVYDKDTFSVDDKMGEAEIDLKPYVQCKQMGLGKLPNGCSLKRIQPDRTNYLAEESSCIWQNGKIVQEMFLRLRNVESGEILVEIEWVDVVGCRGLSQVEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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