Glyma19g19040 - SoyBase

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Report for Sequence Feature Glyma19g19040

Feature Type:	gene_model
Chromosome:	Gm19
Start:	23068701
stop:	23070992
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g19040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70790	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr1:26700724-26702127 FORWARD LENGTH=185	SoyBase	E_val: 4.00E-66	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1030	KOG	Predicted Ca2+-dependent phospholipid-binding protein	JGI		ISS
PTHR26357	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26357:SF5	Panther		JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_G7I9Z6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein AGD12 n=1 Tax=Medicago truncatula RepID=G7I9Z6_MEDTR	SoyBase	E_val: 1.00E-81	ISS
UniRef100_UPI000233EA52	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EA52 related cluster n=1 Tax=unknown RepID=UPI000233EA52	SoyBase	E_val: 1.00E-120	ISS

Expression Patterns of Glyma19g19040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g19040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g070800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g19040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g19040

Limit To All Plant Sequences

>Glyma19g19040.2   sequence type=transcript   gene model=Glyma19g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTCGTGCCCATTGCTTTGTTTTTCGCACATTAAACTCTTGCCTCTAATATGGCAATCTCGGCAACGACAAGTCGTGCATTGTGTTTCAATGGACAATAGTATTCTGGGTCTTCTCAAACTTCGAATTAAAAGAGGCACTAATCTTGCAATACGCGATGCAATAAAAATGCATGCCAGCGACCCTTATGTCATCATCAACATGGGTGAACAGAAGCTAAAGACTGGTGTTGTAAAAGACAACTGCAATCCTGAGTGGAATGAAGAATTCACCCTTTCCATAAAGGACGTCAAAACCCCAATACATCTTTCGGTTTATGACAAGGACACTTTATCTGGAGATGACAAAATGGGTGAGGCAGATATAGACTTGAAACCGTATGTTCAGTGTGTACAAATGGGGTTGAACGAGCGCCCAGATGATTCTTCAGTCAAGAGGATTCAACCAGATGACACTAATTGCCTTGCTGAAGAGAGCAACTGCATTTGGCAAAATGGAAATATTATCCAAGAAATGATTTTGAAATTGAGAAATGTCGAGAGTGGGGAAGTAGTTGTTGAAATTGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACAGGTAGAACTTTAAGTCTGCTTCCATTCTTAAGTTTATGTGAAGCATTGAAACCTTGGATGCCTGCTCCAGCATGATGTAGTGGTAAATGTATTGTGATTTTGCTATTGTTGAATGTGTAATCCTATGTTGAGACTAGTTTTAGTGCTTTATTTTCTGGAGTGAGACAAGTGATTAGTTGCTTCTCGAAATATTGATTTAAGGGATAATTGATCTATTTTTTTATTAAAAAATTGTACCTATAATTCTTGTACCTTACTATATAAACAATTAATTTTTAAAGAATAA

>Glyma19g19040.3   sequence type=transcript   gene model=Glyma19g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCTTTTGAGTTCAGTAATTTGTCCACATTTAAGATGATGGGGCGTGATTGGCATATGGAATTGTTATGTAACAAAGTCAATCAAAAGCTAAAGACTGGTGTTGTAAAAGACAACTGCAATCCTGAGTGGAATGAAGAATTCACCCTTTCCATAAAGGACGTCAAAACCCCAATACATCTTTCGGTTTATGACAAGGACACTTTATCTGGAGATGACAAAATGGGTGAGGCAGATATAGACTTGAAACCGTATGTTCAGTGTGTACAAATGGGGTTGAACGAGCGCCCAGATGATTCTTCAGTCAAGAGGATTCAACCAGATGACACTAATTGCCTTGCTGAAGAGAGCAACTGCATTTGGCAAAATGGAAATATTATCCAAGAAATGATTTTGAAATTGAGAAATGTCGAGAGTGGGGAAGTAGTTGTTGAAATTGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACAGGTAGAACTTTAAGTCTGCTTCCATTCTTAAGTTTATGTGAAGCATTGAAACCTTGGATGCCTGCTCCAGCATGATGTAGTGGTAAATGTATTGTGATTTTGCTATTGTTGAATGTGTAATCCTATGTTGAGACTAGTTTTAGTGCTTTATTTTCTGGAGTGAGACAAGTGATTAGTTGCTTCTCGAAATATTGATTTAAGGGATAATTGATCTATTTTTTTATTAAAAAATTGTACCTATAATTCTTGTACCTTACTATATAAACAATTAATTTTTAAAGAATAA

Coding sequences of Glyma19g19040

Limit To All Plant Sequences

>Glyma19g19040.1   sequence type=CDS   gene model=Glyma19g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAGCTAAAGACTGGTGTTGTAAAAGACAACTGCAATCCTGAGTGGAATGAAGAATTCACCCTTTCCATAAAGGACGTCAAAACCCCAATACATCTTTCGGTTTATGACAAGGACACTTTATCTGGAGATGACAAAATGGGTGAGGCAGATATAGACTTGAAACCGTATGTTCAGTGTGTACAAATGGGGTTGAACGAGCGCCCAGATGATTCTTCAGTCAAGAGGATTCAACCAGATGACACTAATTGCCTTGCTGAAGAGAGCAACTGCATTTGGCAAAATGGAAATATTATCCAAGAAATGATTTTGAAATTGAGAAATGTCGAGAGTGGGGAAGTAGTTGTTGAAATTGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACAGGTAGAACTTTAA

>Glyma19g19040.2   sequence type=CDS   gene model=Glyma19g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAATAGTATTCTGGGTCTTCTCAAACTTCGAATTAAAAGAGGCACTAATCTTGCAATACGCGATGCAATAAAAATGCATGCCAGCGACCCTTATGTCATCATCAACATGGGTGAACAGAAGCTAAAGACTGGTGTTGTAAAAGACAACTGCAATCCTGAGTGGAATGAAGAATTCACCCTTTCCATAAAGGACGTCAAAACCCCAATACATCTTTCGGTTTATGACAAGGACACTTTATCTGGAGATGACAAAATGGGTGAGGCAGATATAGACTTGAAACCGTATGTTCAGTGTGTACAAATGGGGTTGAACGAGCGCCCAGATGATTCTTCAGTCAAGAGGATTCAACCAGATGACACTAATTGCCTTGCTGAAGAGAGCAACTGCATTTGGCAAAATGGAAATATTATCCAAGAAATGATTTTGAAATTGAGAAATGTCGAGAGTGGGGAAGTAGTTGTTGAAATTGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACAGGTAGAACTTTAA

>Glyma19g19040.3   sequence type=CDS   gene model=Glyma19g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGGCGTGATTGGCATATGGAATTGTTATGTAACAAAGTCAATCAAAAGCTAAAGACTGGTGTTGTAAAAGACAACTGCAATCCTGAGTGGAATGAAGAATTCACCCTTTCCATAAAGGACGTCAAAACCCCAATACATCTTTCGGTTTATGACAAGGACACTTTATCTGGAGATGACAAAATGGGTGAGGCAGATATAGACTTGAAACCGTATGTTCAGTGTGTACAAATGGGGTTGAACGAGCGCCCAGATGATTCTTCAGTCAAGAGGATTCAACCAGATGACACTAATTGCCTTGCTGAAGAGAGCAACTGCATTTGGCAAAATGGAAATATTATCCAAGAAATGATTTTGAAATTGAGAAATGTCGAGAGTGGGGAAGTAGTTGTTGAAATTGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACAGGTAGAACTTTAA

Predicted protein sequences of Glyma19g19040

Limit To All Plant Sequences

>Glyma19g19040.1   sequence type=predicted peptide   gene model=Glyma19g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKLKTGVVKDNCNPEWNEEFTLSIKDVKTPIHLSVYDKDTLSGDDKMGEADIDLKPYVQCVQMGLNERPDDSSVKRIQPDDTNCLAEESNCIWQNGNIIQEMILKLRNVESGEVVVEIEWVDVIGCKGLSQVEL*

>Glyma19g19040.2   sequence type=predicted peptide   gene model=Glyma19g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNSILGLLKLRIKRGTNLAIRDAIKMHASDPYVIINMGEQKLKTGVVKDNCNPEWNEEFTLSIKDVKTPIHLSVYDKDTLSGDDKMGEADIDLKPYVQCVQMGLNERPDDSSVKRIQPDDTNCLAEESNCIWQNGNIIQEMILKLRNVESGEVVVEIEWVDVIGCKGLSQVEL*

>Glyma19g19040.3   sequence type=predicted peptide   gene model=Glyma19g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGRDWHMELLCNKVNQKLKTGVVKDNCNPEWNEEFTLSIKDVKTPIHLSVYDKDTLSGDDKMGEADIDLKPYVQCVQMGLNERPDDSSVKRIQPDDTNCLAEESNCIWQNGNIIQEMILKLRNVESGEVVVEIEWVDVIGCKGLSQVEL*

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