Glyma19g18581 - SoyBase

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Report for Sequence Feature Glyma19g18581

Feature Type:	gene_model
Chromosome:	Gm19
Start:	22679426
stop:	22681115
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g18581

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49570	AT	Annotation by Michelle Graham. TAIR10: peptide-N-glycanase 1 \| chr5:20112071-20116125 REVERSE LENGTH=721	SoyBase	E_val: 3.00E-32	ISS
GO:0006289	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010188	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to microbial phytotoxin	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000224	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
UniRef100_G7L1U9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=1 Tax=Medicago truncatula RepID=G7L1U9_MEDTR	SoyBase	E_val: 4.00E-47	ISS
UniRef100_UPI000233EA4F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EA4F related cluster n=1 Tax=unknown RepID=UPI000233EA4F	SoyBase	E_val: 6.00E-111	ISS

Expression Patterns of Glyma19g18581

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g18581 not represented in the dataset	Glyma19g18581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g18581 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g18581

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g18581

Limit To All Plant Sequences

>Glyma19g18581.2   sequence type=transcript   gene model=Glyma19g18581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAAAAAGATTAACTTCTATAGAAATTTTTTAAAGGTATTTCTTGATCTCCATTACGACACAGACAACGGCTTCGAAGTTTTCCAATTCCAGCTCTATTCCCTCTCTTCCGTTCCACCTCATCAACAAAAGATTTTCGGAGCCGAACAAGATACTCCAGTGGTCAATGACTCTGATCTCGTAGCCATTTCTGACAAACTACGACTAGTCTCGGTCAACGACTCCGAACCGGAACCAAGCGCTGCCGATTTGTTGAAATCCGATGAGGAATTGGCCAGACTCTTGCAGGTAGAGGAGGAAGCGCTAATGTTGCAGCAGTATGTGGCAAGCCAAAATCCTCGAGAATTTGATAGTAGAGTATGGCCCTACGTTAGTCAAGTCCTAATGTTGCAGCAGTATGGGCTATATTTTTTTGCGGAATATGATATTAAATGCATAATTGACTTTCATGTTGTTCTTGGTTCCCAAAATGGGATGGAGCATAGTGCAAGCAGAGATGGATTTACAGGCTAGCCAACTTCTCCTAATTACATTTCCGACTCATTATATGTTATTGAATTTTTAGTTTCTAGGTATGTTTTAAATGCGCAAACATATTCT

>Glyma19g18581.3   sequence type=transcript   gene model=Glyma19g18581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAAAAAGATTAACTTCTATAGAAATTTTTTAAAGGTATTTCTTGATCTCCATTACGACACAGACAACGGCTTCGAAGTTTTCCAATTCCAGCTCTATTCCCTCTCTTCCGTTCCACCTCATCAACAAAAGATTTTCGGAGCCGAACAAGATACTCCAGTGGTCAATGACTCTGATCTCGTAGCCATTTCTGACAAACTACGACTAGTCTCGGTCAACGACTCCGAACCGGAACCAAGCGCTGCCGATTTGTTGAAATCCGATGAGGAATTGGCCAGACTCTTGCAGGTAGAGGAGGAAGCGCTAATGTTGCAGCAGTATGTGGCAAGCCAAAATCCTCGAGAATTTGATAGTAGAGTATGGCCCTACGTTAGTCAAGTCCTAATGTTGCAGCAGTATGGGCTATATTTTTTTGCGTGAGTATGAAATTTGGAATATGATATTAAATGCATAATTGACTTTCATGTTGTTCTTGGTTCCCAAAATGGGATGGAGCATAGTGCAAGCAGAGATGGATTTACAGGCTAGCCAACTTCTCCTAATTACATTTCCGACTCATTATATGTTATTGAATTTTTAGTTTCTAGGTATGTTTTAAATGCGCAAACATATTCT

Coding sequences of Glyma19g18581

Limit To All Plant Sequences

>Glyma19g18581.1   sequence type=CDS   gene model=Glyma19g18581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAAAAAGATTAACTTCTATAGAAATTTTTTAAAGGTATTTCTTGATCTCCATTACGACACAGACAACGGCTTCGAAGTTTTCCAATTCCAGCTCTATTCCCTCTCTTCCGTTCCACCTCATCAACAAAAGATTTTCGGAGCCGAACAAGATACTCCAGTGGTCAATGACTCTGATCTCGTAGCCATTTCTGACAAACTACGACTAGTCTCGGTCAACGACTCCGAACCGGAACCAAGCGCTGCCGATTTGTTGAAATCCGATGAGGAATTGGCCAGACTCTTGCAGGTAGAGGAGGAAGCGCTAATGTTGCAGCAGTATGTGGCAAGCCAAAATCCTCGAGAATTTGATAGTAGAGTATGGCCCTACGTTAGTCAAGTCCTAATGTTGCAGCAGTATGGGCTATATTTTTTTGCGGAATATGATATTAAATGCATAATTGACTTTCATGTTGTTCTTGGTTCCCAAAATGGGATGGAGCATAGTGCAAGCAGAGATGGATTTACAGGTGGATGA

>Glyma19g18581.2   sequence type=CDS   gene model=Glyma19g18581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAAAAAGATTAACTTCTATAGAAATTTTTTAAAGGTATTTCTTGATCTCCATTACGACACAGACAACGGCTTCGAAGTTTTCCAATTCCAGCTCTATTCCCTCTCTTCCGTTCCACCTCATCAACAAAAGATTTTCGGAGCCGAACAAGATACTCCAGTGGTCAATGACTCTGATCTCGTAGCCATTTCTGACAAACTACGACTAGTCTCGGTCAACGACTCCGAACCGGAACCAAGCGCTGCCGATTTGTTGAAATCCGATGAGGAATTGGCCAGACTCTTGCAGGTAGAGGAGGAAGCGCTAATGTTGCAGCAGTATGTGGCAAGCCAAAATCCTCGAGAATTTGATAGTAGAGTATGGCCCTACGTTAGTCAAGTCCTAATGTTGCAGCAGTATGGGCTATATTTTTTTGCGGAATATGATATTAAATGCATAATTGACTTTCATGTTGTTCTTGGTTCCCAAAATGGGATGGAGCATAGTGCAAGCAGAGATGGATTTACAGGCTAG

>Glyma19g18581.3   sequence type=CDS   gene model=Glyma19g18581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAAAAAGATTAACTTCTATAGAAATTTTTTAAAGGTATTTCTTGATCTCCATTACGACACAGACAACGGCTTCGAAGTTTTCCAATTCCAGCTCTATTCCCTCTCTTCCGTTCCACCTCATCAACAAAAGATTTTCGGAGCCGAACAAGATACTCCAGTGGTCAATGACTCTGATCTCGTAGCCATTTCTGACAAACTACGACTAGTCTCGGTCAACGACTCCGAACCGGAACCAAGCGCTGCCGATTTGTTGAAATCCGATGAGGAATTGGCCAGACTCTTGCAGGTAGAGGAGGAAGCGCTAATGTTGCAGCAGTATGTGGCAAGCCAAAATCCTCGAGAATTTGATAGTAGAGTATGGCCCTACGTTAGTCAAGTCCTAATGTTGCAGCAGTATGGGCTATATTTTTTTGCGTGA

Predicted protein sequences of Glyma19g18581

Limit To All Plant Sequences

>Glyma19g18581.1   sequence type=predicted peptide   gene model=Glyma19g18581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKINFYRNFLKVFLDLHYDTDNGFEVFQFQLYSLSSVPPHQQKIFGAEQDTPVVNDSDLVAISDKLRLVSVNDSEPEPSAADLLKSDEELARLLQVEEEALMLQQYVASQNPREFDSRVWPYVSQVLMLQQYGLYFFAEYDIKCIIDFHVVLGSQNGMEHSASRDGFTGG*

>Glyma19g18581.2   sequence type=predicted peptide   gene model=Glyma19g18581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKINFYRNFLKVFLDLHYDTDNGFEVFQFQLYSLSSVPPHQQKIFGAEQDTPVVNDSDLVAISDKLRLVSVNDSEPEPSAADLLKSDEELARLLQVEEEALMLQQYVASQNPREFDSRVWPYVSQVLMLQQYGLYFFAEYDIKCIIDFHVVLGSQNGMEHSASRDGFTG*

>Glyma19g18581.3   sequence type=predicted peptide   gene model=Glyma19g18581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKINFYRNFLKVFLDLHYDTDNGFEVFQFQLYSLSSVPPHQQKIFGAEQDTPVVNDSDLVAISDKLRLVSVNDSEPEPSAADLLKSDEELARLLQVEEEALMLQQYVASQNPREFDSRVWPYVSQVLMLQQYGLYFFA*

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