Report for Sequence Feature Glyma19g18350
Feature Type: gene_model
Chromosome: Gm19
Start: 22266606
stop: 22273553
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g18350
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G27120 AT
Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:10000248-10003265 REVERSE LENGTH=476
SoyBase E_val: 0 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
KOG0740
KOG
AAA+-type ATPase
JGI ISS
PTHR23074 Panther
AAA ATPASE
JGI ISS
PTHR23074:SF17 Panther
FIDGETIN LIKE-1
JGI ISS
PF00004 PFAM
ATPase family associated with various cellular activities (AAA)
JGI ISS
PF09336 PFAM
Vps4 C terminal oligomerisation domain
JGI ISS
UniRef100_B9RBJ1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBJ1_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233F167 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F167 related cluster n=1 Tax=unknown RepID=UPI000233F167
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g18350
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g18350
Paralog Evidence Comments
Glyma05g14440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g18350 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g071600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g18350
Coding sequences of Glyma19g18350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g18350.2 sequence type=CDS gene model=Glyma19g18350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGAAGCGAAGGAAAAGTGTTGGAGAATGGAAGTGGAGGAGAAGCTGAAGAGGCTGCAATCTCTTCTCTTCGGCGCTGAGCGCGCTCTCGAGAACAATGACTTCTCCTCCGCTTACGTCCTCGCGCTTCGCCTCCTCGGATTCCTCGACGCGAATTCCCACTCCGACGTCGACGAAGCCTTCGTGCAACCGATTCGTCGCGACGCTCTCGCCAAACTCCACTTCGCTCGCCAATCCCTCGCTCCTCAATCTGATCGCCAAGCTTTTGAACAAGCAAAGAAATCTCCAGGACGCATTTTTGGCACTACAGGAGATATTGACATTGAGAAGATTCAGAACTCAAAGTACTTCCAAGCTCTTGTCAAGCAATCTAAAGAAAAAGATGAGAATCAACCCGTTGATCACCTGGGGAAACAGGACAAAGCAGGCAGCAAAGCCTCAAAGCAAATGGTGCAAACTAAGTTACCATCCATGTATGGGAAAAGCAGCTTGAGAACTAGCAATGGTCCCAAGAGTTTTTTGAACATGAAAAATAATAGCTCTGAGGACTGCATGATTCTTGATAGGCCTCAATCTCATGCTAGCCATATAAAGGGTCCTGGTTTCTCTTCTATATTGCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAGCACATTCTCCGCAAAACGTGTACACATGGAAAACAATTGTCCCAGAGTTGGATTTGTGAAGTCACCTTCAAGTAAGGAGGATGTTAACCCTGATGCTTGTGGCAACGGGTTTGTTACTGCTAGAGCAAAACTGGAAATGGAAGCAAAGCAGAAGCGAGGAGTAGGTGGTTCACCCAGTGCCTCTGTCTCACCACAATGTGATAACAATTCTGCCAACAGGTTGTATGGTGGAAGATCATATGGTGTTTCACGACGTGGTGTCCGTGGTAATTTTGTTCCCCCCATTAAATCCAATGGGAACAATGCTGGAAATATGAGCGCACGCGTTGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCCTATGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCACGCCTCATTGAACATGTTAGTAACGAGATTATGGATAGAGATCCCAATGTCCGGTGGGATGATATAGCTGGATTGGAGCATGCCAAGAAATGTGTCAATGAGATGGTTGTATATCCTCTGCAACGTCCTGATATATTCATGGGCTGTCGTTCCCCTGGGAGGGGTCTGCTTCTCTTTGGTCCCCCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCGGCAAGTTCATTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTTGTAAGAGCCCTTTTTGGAGTTGCCAGCTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCAAGTAGACGGCTAAAGACGCAGTTCCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGACTTTATATTCCCCTACCTTGCTCAGAGGCAAGAGCTTGGATTACACGTAACCTTCTAGAGAAAGATGGATTATTCAAGCTATCAAGCGAGGAAATGGATATCATATGCAAATTAACGGAAGGTTATTCAGGATCAGACATGAAAAATTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAGGTCAAGGTATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGACCTGTAACTCTTCAGGACTTCAAGAATTCCCTCCAAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGTAACTTATGAACAATGGAACAAGCAATTTGGAAGCCTATCACTGTAG
Predicted protein sequences of Glyma19g18350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g18350.2 sequence type=predicted peptide gene model=Glyma19g18350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEAKEKCWRMEVEEKLKRLQSLLFGAERALENNDFSSAYVLALRLLGFLDANSHSDVDEAFVQPIRRDALAKLHFARQSLAPQSDRQAFEQAKKSPGRIFGTTGDIDIEKIQNSKYFQALVKQSKEKDENQPVDHLGKQDKAGSKASKQMVQTKLPSMYGKSSLRTSNGPKSFLNMKNNSSEDCMILDRPQSHASHIKGPGFSSILQVEGEERAFGSTFSAKRVHMENNCPRVGFVKSPSSKEDVNPDACGNGFVTARAKLEMEAKQKRGVGGSPSASVSPQCDNNSANRLYGGRSYGVSRRGVRGNFVPPIKSNGNNAGNMSARVAGKCDDSLDDSTKKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVNEMVVYPLQRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPCSEARAWITRNLLEKDGLFKLSSEEMDIICKLTEGYSGSDMKNLVKDASMGPLREALGQGIEITKLKKEDMRPVTLQDFKNSLQEVRPSVSPNELVTYEQWNKQFGSLSL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
