Glyma19g18340 - SoyBase

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Report for Sequence Feature Glyma19g18340

Feature Type:	gene_model
Chromosome:	Gm19
Start:	22260029
stop:	22265975
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g18340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02740	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S24e family protein \| chr5:616517-618267 FORWARD LENGTH=228	SoyBase	E_val: 3.00E-43	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
UniRef100_I1N791	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N791_SOYBN	SoyBase	E_val: 3.00E-166	ISS
UniRef100_Q8H8U7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8H8U7_ORYSJ	SoyBase	E_val: 4.00E-38	ISS

Expression Patterns of Glyma19g18340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g18340

Paralog	Evidence	Comments
Glyma05g14430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g18340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g071700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g18340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g18340

Limit To All Plant Sequences

>Glyma19g18340.3   sequence type=transcript   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTTCTCGCTGCACTGCTTCTTCGTTCTTCTCTCTGGCGACCAAACTCGAAGAATCCAAACAGGTTTGTTGTGGAAGATGAGTGGTGTTGTTAGGGCTGCATTGAGATCCACCACTAGTGTTTGTGCACTTGTGCAGAGAAGCCATGGCCTCCTCCCATTGAGGTGCTTCTCCACTGAGGCAGAACAGCCACCTTTGAATTCAACACCCCCTCCTCCTCCGTTCTTTGAGACTGACCATTCAGGGTGTAATTTGACTCTGGAGGATGTTAAAATGGATTATGACCGTAGCTTTTCCCCAGTTTCAACGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTTCAATTCAAGGACTCAAGCAATGAATGCATACATTGCAAAAAATGGAACGTTTTGCCAAAACAATCGCATTTGGATACAAGTTATCCAGTAATACACGCGCCCCTTACTGGCGCTAGTGTTATAGTACTGCTTTAATAGAGTGCAGAGTAGTTTAAGTTGCTTTTTTCTTGGTAATTTTGGATTTCATAATGTCTTCGGTTTAAAGGGATGCAAGGAAATGGCTACCTTGAATAAAAACACTTGATAGTTGATTGGTAGTTGATGAAGAGTTTGGTTTTTCTTCGTATTGAAATGTGTTTTTATATTAACGATGAAGTCAAGGTTTTTTAAATGACTTTGAAAACGTGTTGTTGATTATATGATAATTTGAGTTTAGAAATTCCATATATCGATGTATCTAGGTATATGAAAGATGCTACTTTTCAATATATATCCGTGATTTCATGT

>Glyma19g18340.6   sequence type=transcript   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCAATTATTGCCTTCCTCTTTCCTTCCCTCTCCCCCTTTTTATTCTAGCTTATTTCCCCTCTCTTTTTCTTCCTCAATTGCCACATCAGCATTCCATTATATTCTCAGCTCTTCTGCATGACTCTCTCCATGTAATCTAGCATAGCTAACATCCTGTAAGTGGATTATCATTGTATTTGACTAAATGTTTCTCATCTTAGACTGCATACCTGAAGATATCATTTATATGAAAGTCTTGGGTATTATCAGGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTTCAATTCAAGGACTCAAGCAATGAATGCATACATTGCAAAAAATGGAACGTTTTGCCAAAACAATCGCATTTGGATACAAGTTATCCAGTAATACACGCGCCCCTTACTGGCGCTAGTGTTATAGTACTGCTTTAATAGAGTGCAGAGTAGTTTAAGTTGCTTTTTTCTTGGTAATTTTGGATTTCATAATGTCTTCGGTTTAAAGGGATGCAAGGAAATGGCTACCTTGAATAAAAACACTTGATAGTTGATTGGTAGTTGATGAAGAGTTTGGTTTTTCTTCGTATTGAAATGTGTTTTTATATTAACGATGAAGTCAAGGTTTTTTAAATGACTTTGAAAACGTGTTGTTGATTATATGATAATTTGAGTTTAGAAATTCCATATATCGATGTATCTAGGTATATGAAAGATGCTACTTTTCAATATATATCCGTGATTTCATGT

>Glyma19g18340.7   sequence type=transcript   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTTCTCGCTGCACTGCTTCTTCGTTCTTCTCTCTGGCGACCAAACTCGAAGAATCCAAACAGGTTTGTTGTGGAAGATGAGTGGTGTTGTTAGGGCTGCATTGAGATCCACCACTAGTGTTTGTGCACTTGTGCAGAGAAGCCATGGCCTCCTCCCATTGAGGTGCTTCTCCACTGAGGCAGAACAGCCACCTTTGAATTCAACACCCCCTCCTCCTCCGTTCTTTGAGACTGACCATTCAGGTTTGACATATGGTAATCTGCTTGGTGTTCGTAAATATGCGCTGAAAACTGATATCATCAACTTTCTTGAAGGGTGTAATTTGACTCTGGAGGATGTTAAAATGGATTATGACCGTAGCTTTTCCCCAGTTTCAACGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTTCAATTCAAGGACTCAAGCAATGAATGCATACATTGCAAAAAATGGAACGTTTTGCCAAAACAATCGCATTTGGATACAAGTTATCCAGTAATACACGCGCCCCTTACTGGCGCTAGTGTTATAGTACTGCTTTAATAGAGTGCAGAGTAGTTTAAGTTGCTTTTTTCTTGGTAATTTTGGATTTCATAATGTCTTCGGTTTAAAGGGATGCAAGGAAATGGCTACCTTGAATAAAAACACTTGATAGTTGATTGGTAGTTGATGAAGAGTTTGGTTTTTCTTCGTATTGAAATGTGTTTTTATATTAACGATGAAGTCAAGGTTTTTTAAATGACTTTGAAAACGTGTTGTTGATTATATGATAATTTGAGTTTAGAAATTCCATATATCGATGTATCTAGGTATATGAAAGATGCTACTTTTCAATATATATCCGTGATTTCATGT

>Glyma19g18340.8   sequence type=transcript   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAGTGGGCTGTTTGGAATAGTGATGGGCCAATTCGGCACCCAAAACTAAAAGCCTATAGCCGACTAACTCCACTTCCCTGAAAACTTGTGTTGGTGCCCTTCTCGCTGCACTGCTTCTTCGTTCTTCTCTCTGGCGACCAAACTCGAAGAATCCAAACAGCAGGTTTGTTGTGGAAGATGAGTGGTGTTGTTAGGGCTGCATTGAGATCCACCACTAGTGTTTGTGCACTTGTGCAGAGAAGCCATGGCCTCCTCCCATTGAGGTGCTTCTCCACTGAGGCAGAACAGCCACCTTTGAATTCAACACCCCCTCCTCCTCCGTTCTTTGAGACTGACCATTCAGGTTTGACATATGGTAATCTGCTTGGTGTTCGTAAATATGCGCTGAAAACTGATATCATCAACTTTCTTGAAGGGTGTAATTTGACTCTGGAGGATGTTAAAATGGATTATGACCGTAGCTTTTCCCCAGTTTCAACGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTTCAATTCAAGGACTCAAGCAATGAATGCATACATTGCAAAAAATGGAACGTTTTGCCAAAACAATCGCATTTGGATACAAGTTATCCAGTAATACACGCGCCCCTTACTGGCGCTAGTGTTATAGTACTGCTTTAATAGAGTGCAGAGTAGTTTAAGTTGCTTTTTTCTTGGTAATTTTGGATTTCATAATGTCTTCGGTTTAAAGGGATGCAAGGAAATGGCTACCTTGAATAAAAACACTTGATAGTTGATTGGTAGTTGATGAAGAGTTTGGTTTTTCTTCGTATTGAAATGTGTTTTTATATTAACGATGAAGTCAAGGTTTTTTAAATGACTTTGAAAACGTGTTGTTGATTATATGATAATTTGAGTTTAGAAATTCCATATATCGATGTATCTAGGTATATGAAAGATGCTACTTTTCAATATATATCCGTGATTTCATGTAGCCCAGTTCTTTGAATAAGTTTGTGTCGTGGATATTATGCAAC

Coding sequences of Glyma19g18340

Limit To All Plant Sequences

>Glyma19g18340.2   sequence type=CDS   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTGTTGTTAGGGCTGCATTGAGATCCACCACTAGTGTTTGTGCACTTGTGCAGAGAAGCCATGGCCTCCTCCCATTGAGGTGCTTCTCCACTGAGGCAGAACAGCCACCTTTGAATTCAACACCCCCTCCTCCTCCGTTCTTTGAGACTGACCATTCAGGTTTGACATATGGTAATCTGCTTGGTGTTCGTAAATATGCGCTGAAAACTGATATCATCAACTTTCTTGAAGGGTGTAATTTGACTCTGGAGGATGTTAAAATGGATTATGACCGTAGCTTTTCCCCAGTTTCAACGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTGGAAGTTGTCAATGTTTTTGTCAGGACCAAGCTATTTAAGGCATTGCATTCTTATGCATTCTCAGATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGA

>Glyma19g18340.3   sequence type=CDS   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTGTTGTTAGGGCTGCATTGAGATCCACCACTAGTGTTTGTGCACTTGTGCAGAGAAGCCATGGCCTCCTCCCATTGAGGTGCTTCTCCACTGAGGCAGAACAGCCACCTTTGAATTCAACACCCCCTCCTCCTCCGTTCTTTGAGACTGACCATTCAGGGTGTAATTTGACTCTGGAGGATGTTAAAATGGATTATGACCGTAGCTTTTCCCCAGTTTCAACGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTTCAATTCAAGGACTCAAGCAATGAATGCATACATTGCAAAAAATGGAACGTTTTGCCAAAACAATCGCATTTGGATACAAGTTATCCAGTAA

>Glyma19g18340.6   sequence type=CDS   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCTCATCTTAGACTGCATACCTGAAGATATCATTTATATGAAAGTCTTGGGTATTATCAGGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTTCAATTCAAGGACTCAAGCAATGAATGCATACATTGCAAAAAATGGAACGTTTTGCCAAAACAATCGCATTTGGATACAAGTTATCCAGTAA

>Glyma19g18340.7   sequence type=CDS   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTGTTGTTAGGGCTGCATTGAGATCCACCACTAGTGTTTGTGCACTTGTGCAGAGAAGCCATGGCCTCCTCCCATTGAGGTGCTTCTCCACTGAGGCAGAACAGCCACCTTTGAATTCAACACCCCCTCCTCCTCCGTTCTTTGAGACTGACCATTCAGGTTTGACATATGGTAATCTGCTTGGTGTTCGTAAATATGCGCTGAAAACTGATATCATCAACTTTCTTGAAGGGTGTAATTTGACTCTGGAGGATGTTAAAATGGATTATGACCGTAGCTTTTCCCCAGTTTCAACGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTTCAATTCAAGGACTCAAGCAATGAATGCATACATTGCAAAAAATGGAACGTTTTGCCAAAACAATCGCATTTGGATACAAGTTATCCAGTAA

>Glyma19g18340.8   sequence type=CDS   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTGTTGTTAGGGCTGCATTGAGATCCACCACTAGTGTTTGTGCACTTGTGCAGAGAAGCCATGGCCTCCTCCCATTGAGGTGCTTCTCCACTGAGGCAGAACAGCCACCTTTGAATTCAACACCCCCTCCTCCTCCGTTCTTTGAGACTGACCATTCAGGTTTGACATATGGTAATCTGCTTGGTGTTCGTAAATATGCGCTGAAAACTGATATCATCAACTTTCTTGAAGGGTGTAATTTGACTCTGGAGGATGTTAAAATGGATTATGACCGTAGCTTTTCCCCAGTTTCAACGTTGTTGCAATTCCCTACTCGTGATTCCTTTGACCATGCTGTAAAAGTGATTTTAAAGAAGGGTCGCTTGTACAAATTGGACAGGGTTAATCTTCACCAATGGGACCAAGTAAAACCATATGACGGAAAAACTATTTTAATTCAAGGAATGCCTCGAGCAGGTACATATGAAGATATAGGACGCATCCTCTCCGGTTTTGAATTTGATTCCTCCTCCATTAGCTTGTTTTTAAGGCCCGGAGGTACGGCAGGTGCGGATCCCATTAAACTGGCCACAGTACGTTTCAATTCAAGGACTCAAGCAATGAATGCATACATTGCAAAAAATGGAACGTTTTGCCAAAACAATCGCATTTGGATACAAGTTATCCAGTAA

Predicted protein sequences of Glyma19g18340

Limit To All Plant Sequences

>Glyma19g18340.2   sequence type=predicted peptide   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVVRAALRSTTSVCALVQRSHGLLPLRCFSTEAEQPPLNSTPPPPPFFETDHSGLTYGNLLGVRKYALKTDIINFLEGCNLTLEDVKMDYDRSFSPVSTLLQFPTRDSFDHAVKVILKKGRLYKLDRVNLHQWDQVKPYDGKTILEVVNVFVRTKLFKALHSYAFSDFNSRNASSRYI*

>Glyma19g18340.3   sequence type=predicted peptide   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVVRAALRSTTSVCALVQRSHGLLPLRCFSTEAEQPPLNSTPPPPPFFETDHSGCNLTLEDVKMDYDRSFSPVSTLLQFPTRDSFDHAVKVILKKGRLYKLDRVNLHQWDQVKPYDGKTILIQGMPRAGTYEDIGRILSGFEFDSSSISLFLRPGGTAGADPIKLATVRFNSRTQAMNAYIAKNGTFCQNNRIWIQVIQ*

>Glyma19g18340.6   sequence type=predicted peptide   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLILDCIPEDIIYMKVLGIIRLLQFPTRDSFDHAVKVILKKGRLYKLDRVNLHQWDQVKPYDGKTILIQGMPRAGTYEDIGRILSGFEFDSSSISLFLRPGGTAGADPIKLATVRFNSRTQAMNAYIAKNGTFCQNNRIWIQVIQ*

>Glyma19g18340.7   sequence type=predicted peptide   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVVRAALRSTTSVCALVQRSHGLLPLRCFSTEAEQPPLNSTPPPPPFFETDHSGLTYGNLLGVRKYALKTDIINFLEGCNLTLEDVKMDYDRSFSPVSTLLQFPTRDSFDHAVKVILKKGRLYKLDRVNLHQWDQVKPYDGKTILIQGMPRAGTYEDIGRILSGFEFDSSSISLFLRPGGTAGADPIKLATVRFNSRTQAMNAYIAKNGTFCQNNRIWIQVIQ*

>Glyma19g18340.8   sequence type=predicted peptide   gene model=Glyma19g18340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVVRAALRSTTSVCALVQRSHGLLPLRCFSTEAEQPPLNSTPPPPPFFETDHSGLTYGNLLGVRKYALKTDIINFLEGCNLTLEDVKMDYDRSFSPVSTLLQFPTRDSFDHAVKVILKKGRLYKLDRVNLHQWDQVKPYDGKTILIQGMPRAGTYEDIGRILSGFEFDSSSISLFLRPGGTAGADPIKLATVRFNSRTQAMNAYIAKNGTFCQNNRIWIQVIQ*

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