SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g17150): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g17150): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma19g17150

Feature Type:gene_model
Chromosome:Gm19
Start:20868324
stop:20874957
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63780AT Annotation by Michelle Graham. TAIR10: Ribosomal RNA processing Brix domain protein | chr1:23665045-23667243 REVERSE LENGTH=294 SoyBaseE_val: 1.00E-17ISS
GO:0000478GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005732GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex SoyBaseN/AISS
GO:0015030GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Cajal body SoyBaseN/AISS
GO:0016363GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear matrix SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR22734Panther U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 JGI ISS
UniRef100_G7IW56UniRef Annotation by Michelle Graham. Most informative UniRef hit: U3 small nucleolar ribonucleoprotein IMP4 n=2 Tax=Medicago truncatula RepID=G7IW56_MEDTR SoyBaseE_val: 1.00E-19ISS
UniRef100_I1JWH6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWH6_SOYBN SoyBaseE_val: 2.00E-23ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g17150 not represented in the dataset

Glyma19g17150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g17150.1   sequence type=CDS   gene model=Glyma19g17150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAATGATCAGTACTCGTCACCACTACTCAAGAGAAACAGCTCTAAATCCCGTGTACAGATTAATGGCAGCAATCGAGAGAGATGTAGTATGGATGAAGAGAGAAGTGTGAGGATCATGGACTCTGGTGTGAGGAAACCAGCAGGTAGTGGTATGAAGATCATTGACTCTGGTTGCTCCCATGGAGATTCCTTCCATTATAAAGCAACCATAGAATTCGGAATACTCAGTTCGAGAACGCACATTGACGATGAGTATGCTTATGCTGTGGAAAAGGATCCTAAAATTTTGCTGACTTGGGATCCTAGTGCTCCTCTTCAACAGTTTGTTAAGGAGTTGAGTTTTGTGTTTCCCAATGTGCAAAGGATGAATCGCGGTGGTCAGAATTCAGCCTGGCTCATACAGAGAGGAGTGAAGATTGAAAATAATTAA

>Glyma19g17150.1   sequence type=predicted peptide   gene model=Glyma19g17150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNDQYSSPLLKRNSSKSRVQINGSNRERCSMDEERSVRIMDSGVRKPAGSGMKIIDSGCSHGDSFHYKATIEFGILSSRTHIDDEYAYAVEKDPKILLTWDPSAPLQQFVKELSFVFPNVQRMNRGGQNSAWLIQRGVKIENN*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo