|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G47830 | AT | Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein | chr3:17647069-17648346 FORWARD LENGTH=293 | SoyBase | E_val: 4.00E-41 | ISS |
GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
PF00730 | PFAM | HhH-GPD superfamily base excision DNA repair protein | JGI | ISS | |
UniRef100_G7JNR0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ultraviolet N-glycosylase/AP lyase n=1 Tax=Medicago truncatula RepID=G7JNR0_MEDTR | SoyBase | E_val: 3.00E-48 | ISS |
UniRef100_I1JZX0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZX0_SOYBN | SoyBase | E_val: 3.00E-57 | ISS |
Glyma19g16312 not represented in the dataset |
Glyma19g16312 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.19g065500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g16312.1 sequence type=CDS gene model=Glyma19g16312 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTTATTAGCATTACTGCAAGATGATAAATTAGAACAAGAATCACCCGAACCGGTTCTCGACGGTCTGGTCCGAACCGTCCTCTCGCAGAACACCACTGAGGCCAATTCCCAAAAGGCTTTTGCTTCCCTCAAATCCTCCTTTCCCAGTTGGGAACATGTTCTCTGTGCTGAGTCCAAGGACGTGGAGAATGTCATTCGGTGCGGAGGTCTAGCTCCGACTAAGGCTTCCTGCATTAAGAACGTGTTGCGTTGTTTACGCGAGAGAAGAGGTGAATTGTGTTTGGAGTATTTGCGGGACTTGTCAATTGATGAAATTAAGGCTGAGATTTCATTGGTCCCAAAATGGTAA
>Glyma19g16312.1 sequence type=predicted peptide gene model=Glyma19g16312 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLLALLQDDKLEQESPEPVLDGLVRTVLSQNTTEANSQKAFASLKSSFPSWEHVLCAESKDVENVIRCGGLAPTKASCIKNVLRCLRERRGELCLEYLRDLSIDEIKAEISLVPKW*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||