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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G48890 | AT | Annotation by Michelle Graham. TAIR10: membrane-associated progesterone binding protein 3 | chr3:18129669-18131353 FORWARD LENGTH=233 | SoyBase | E_val: 5.00E-63 | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0048523 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG1110 | KOG | Putative steroid membrane receptor Hpr6.6/25-Dx | JGI | ISS | |
| PTHR10281 | Panther | MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED | JGI | ISS | |
| PTHR10281:SF26 | Panther | MEMBRANE STEROID BINDING PROTEIN | JGI | ISS | |
| PF00173 | PFAM | Cytochrome b5-like Heme/Steroid binding domain | JGI | ISS | |
| UniRef100_G7KPK4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane steroid-binding protein n=1 Tax=Medicago truncatula RepID=G7KPK4_MEDTR | SoyBase | E_val: 1.00E-82 | ISS |
| UniRef100_I1N763 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N763_SOYBN | SoyBase | E_val: 8.00E-144 | ISS |
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Glyma19g15780 not represented in the dataset |
Glyma19g15780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g064800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g15780.4 sequence type=transcript gene model=Glyma19g15780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATTTCTCATTCATCCACGATTTGTACTGATACCCTTCCTAATTCAAAAGAACCGACGAATATAGCACCCAAAACGAGCAAACCCAGTGTTAGGTGCCTGCCATTTCAATTTCACCTACCCACGCCCCCTACTATTCCTTATTTTTTTTTTTTCAGAAGCCAACAAGGCCAAGCGCTGAGAGAAAAAGGTTCAGAAATGGGTTTATACACGAGCGTGATGGAAGAGATAAGTTTTTACACAGGGCTATCTCCCGCTGCGTTTTTCACCATTTTGGCTATGATGGTCGTCGTTTACAGAACCGTGAGCGGCATGTTTGTGTCCCCCGAAGACTACAACAAGCCCCCCGTCGTTTCGGCCCGAGCCAATTCCCGGTTAGACGAGTCCGAGCCGCCGCGCGAACCGGTCCAATTGGGCGAAATAACGGACCGGGAATTGCGAGCCTACGATGGCTCCGACCCCAGCAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATGTAGCAGAGCCCTTGCACTCCTGTCTTTTAAACCTGATGACATTAATGGGAACCTCGAAGGTTTAGGTGAGGAAGAGCTTACAATTTTAGAGGACTGGGAATTTAAATTCATAGAAAAGTATCCGAAAGTTGGCCAGCTCATTGCAGAACAAAGAACTCGGCAAAATGAGTTCAAAGAACAAACTCAAGACAATTTGGACAACCCTAATGAATGCAAGGAGGAAGAAAAATAGTAACCATTATATTGTATAGGTTACAACCGAGGGATTTTGTAGGGCTACTGAATCACTGATAGTTTCGAAGTACTGCTTGGTAAGTATGAATACACATAGCAATGCATATTGTCCAGTAGATGGTGGTCATTATTTCAACATAAGCCTCTTGCAATTGATAAAATACATGTTGTATTCGGCCATTGTTTACACATCCCCCAAATCCATATATGTAACTGGATACCGAAAACGTTCTCTTTCCCTCTGCTCATGTAGAAAATGAAATCTAGTTATAGCTTGTTGTACTCATACTGTTCTGCTTACGTAATTACCTCTTTTTGGTGTTTTTAGTCAAACTTGGCATGAAAGATAGAGTTGTTTAATGTTGGCTATACTCTACATATTTTGGTGTTTATTGTTGTCTTCTTAGCAAAGTGTAAAACACACCCCTCTTTTCGGCTCTTTTCTTTAAGGAAGTGTTTATTTCAAGGTGTATTATTATATTCTCAAGAATATTATTTCTGGATAAATTTAAAAATAAATTTAATTAAATTTAATATTTGTAATAATATATTTCAAATCAGA
>Glyma19g15780.3 sequence type=CDS gene model=Glyma19g15780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATTTCTCATTCATCCACGATTTGTACTGATACCCTTCCTAATTCAAAAGAACCGACGAATATAGCACCCAAAACGAGCAAACCCAGTGTTAGGTGCCTGCCATTTCAATTTCACCTACCCACGCCCCCTACTATTCCTTATTTTTTTTTTTTCAGAAGCCAACAAGGCCAAGCGCTGAGAGAAAAAGGTTCAGAAATGGGTTTATACACGAGCGTGATGGAAGAGATAAGTTTTTACACAGGGCTATCTCCCGCTGCGTTTTTCACCATTTTGGCTATGATGGTCGTCGTTTACAGAACCGTGAGCGGCATGTTTGTGTCCCCCGAAGACTACAACAAGCCCCCCGTCGTTTCGGCCCGAGCCAATTCCCGGTTAGACGAGTCCGAGCCGCCGCGCGAACCGGTCCAATTGGGCGAAATAACGGACCGGGAATTGCGAGCCTACGATGGCTCCGACCCCAGCAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAGGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATGTAGCAGAGCCCTTGCACTCCTGTCTTTTAAACCTGATGACATTAATGGGAACCTCGAAGGTTTAGGTGAGGAAGAGCTTACAATTTTAGAGGACTGGGAATTTAAATTCATAGAAAAGTATCCGAAAGTTGGCCAGCTCATTGCAGAACAAAGAACTCGGCAAAATGAGTTCAAAGAACAAACTCAAGACAATTTGGACAACCCTAATGAATGCAAGGAGGAAGAAAAATAG >Glyma19g15780.4 sequence type=CDS gene model=Glyma19g15780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATTTCTCATTCATCCACGATTTGTACTGATACCCTTCCTAATTCAAAAGAACCGACGAATATAGCACCCAAAACGAGCAAACCCAGTGTTAGGTGCCTGCCATTTCAATTTCACCTACCCACGCCCCCTACTATTCCTTATTTTTTTTTTTTCAGAAGCCAACAAGGCCAAGCGCTGAGAGAAAAAGGTTCAGAAATGGGTTTATACACGAGCGTGATGGAAGAGATAAGTTTTTACACAGGGCTATCTCCCGCTGCGTTTTTCACCATTTTGGCTATGATGGTCGTCGTTTACAGAACCGTGAGCGGCATGTTTGTGTCCCCCGAAGACTACAACAAGCCCCCCGTCGTTTCGGCCCGAGCCAATTCCCGGTTAGACGAGTCCGAGCCGCCGCGCGAACCGGTCCAATTGGGCGAAATAACGGACCGGGAATTGCGAGCCTACGATGGCTCCGACCCCAGCAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATGTAGCAGAGCCCTTGCACTCCTGTCTTTTAAACCTGATGACATTAATGGGAACCTCGAAGGTTTAG
>Glyma19g15780.3 sequence type=predicted peptide gene model=Glyma19g15780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSISHSSTICTDTLPNSKEPTNIAPKTSKPSVRCLPFQFHLPTPPTIPYFFFFRSQQGQALREKGSEMGLYTSVMEEISFYTGLSPAAFFTILAMMVVVYRTVSGMFVSPEDYNKPPVVSARANSRLDESEPPREPVQLGEITDRELRAYDGSDPSKPLLMAIKGQIYDVSNGRNFYGPGGPYAMFAGKECSRALALLSFKPDDINGNLEGLGEEELTILEDWEFKFIEKYPKVGQLIAEQRTRQNEFKEQTQDNLDNPNECKEEEK* >Glyma19g15780.4 sequence type=predicted peptide gene model=Glyma19g15780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSISHSSTICTDTLPNSKEPTNIAPKTSKPSVRCLPFQFHLPTPPTIPYFFFFRSQQGQALREKGSEMGLYTSVMEEISFYTGLSPAAFFTILAMMVVVYRTVSGMFVSPEDYNKPPVVSARANSRLDESEPPREPVQLGEITDRELRAYDGSDPSKPLLMAIKGQIYDVSNGIFMVPEDHMQCLQERNVAEPLHSCLLNLMTLMGTSKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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