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Report for Sequence Feature Glyma19g15470

Feature Type:gene_model
Chromosome:Gm19
Start:18641075
stop:18647569
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g15470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24080AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:8139334-8141014 REVERSE LENGTH=470 SoyBaseE_val: 2.00E-143ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF442Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7IDW1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7IDW1_MEDTR SoyBaseE_val: 4.00E-176ISS
UniRef100_I1NGZ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NGZ7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g15470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g15470 not represented in the dataset
Glyma19g15470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g15470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g064600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g15470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g15470
>Glyma19g15470.1   sequence type=CDS   gene model=Glyma19g15470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTTTTAACAAGACAATCTTATGCCAAAGATGAGGTGAATGGTTCGAGGCAGTGGGTACCACAGTGGGCTGCAGTTCCAAATCCATCTAACATTGCTGGAGTTTGTGGCAATGAAGTTTGTAATTTGGACAGAAGTAAGACAAAAGAACTTCTAAATGATATTTCTAATGTGTCAAAATGTGGGGATGCTTGCTTGTCAGATTGTGATTGTGTGGCTTCAGTTTATGGGCTAAATGAGGAGAGGTCATTTTGTTGGGTGTTGAGGAGCTTTAGTTTTGGTGGTTTTCAGGATACTAGCTCAACTTTGTTTCTAAAGGTCAGAGCAAATGGGTCATGGACTTCAGAAGGCCAAGCAGGAGGGTATAATAGCTCCTCTGATGCATTGCTTCCACACGATGTAATGGGAAGTGCAAAGGAGAAGGCTGTGATTATTCCTATTGTTCTGAGCATGGTAGTTCTCATTGTTTTGCTGAGTTTATTACTGTATTTCAGTGTTCACAGAAAAAGAACTTTGAAAAGGGAGATGGAAAGTTCCTTCATCTTATCAGGTGCTCCAATGAGTTTCACATACCGCAATTTGCAAATTCGGACAAGCAACTTCTCACAACTTCTACGAACAGGTGGATTTGGGAGTGTATATAAAGGAAGCCTGGGAGATGGTACTCTAGTGGCAGTGAAGAAACTTGACAGGGTTTTGCCTCATGGAAAGAAGGAATTTATCACTGAAGTAAACACTATTGGATCAATGCATCATATGAATCTGGTTCGCCTATGTGGCTATTGTTCAGAGGGATCACATAGGCTTCTCGTTTATGAGTTCATGAAAAATGGATCCTTGGATAAATGGATCTTCCCTTCATATCAAGGTCAAGATAGATTGTTAGATTGGAAAACTCGTTTAAATATAGCCATAGCTACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGGGATCGGATAATACATTGTGACATCAAACCGGAAAATATATTGGTAGACGAAAACTTTTGTCCCAAAGTATCTGATTTTGGGCTGGCCAAATTGATGGGAAGGGAGCACTCTCATGTGGTGACAATGGTCAGAGGCACTAAAGGCACTTCTTTCTCTCTCGAAATAGCTGAGGAAAATTAG
Predicted protein sequences of Glyma19g15470
>Glyma19g15470.1   sequence type=predicted peptide   gene model=Glyma19g15470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTFLTRQSYAKDEVNGSRQWVPQWAAVPNPSNIAGVCGNEVCNLDRSKTKELLNDISNVSKCGDACLSDCDCVASVYGLNEERSFCWVLRSFSFGGFQDTSSTLFLKVRANGSWTSEGQAGGYNSSSDALLPHDVMGSAKEKAVIIPIVLSMVVLIVLLSLLLYFSVHRKRTLKREMESSFILSGAPMSFTYRNLQIRTSNFSQLLRTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGKKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGQDRLLDWKTRLNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDENFCPKVSDFGLAKLMGREHSHVVTMVRGTKGTSFSLEIAEEN*






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