Glyma19g14230 - SoyBase

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Report for Sequence Feature Glyma19g14230

Feature Type:	gene_model
Chromosome:	Gm19
Start:	17230733
stop:	17236763
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g14230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40350	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 24 \| chr5:16138703-16140946 REVERSE LENGTH=214	SoyBase	E_val: 2.00E-80	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0080086	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen filament development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_Q0PJJ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB98 n=1 Tax=Glycine max RepID=Q0PJJ5_SOYBN	SoyBase	E_val: 4.00E-152	ISS
UniRef100_Q0PJJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: MYB transcription factor MYB98 n=1 Tax=Glycine max RepID=Q0PJJ5_SOYBN	SoyBase	E_val: 4.00E-152	ISS

Expression Patterns of Glyma19g14230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g14230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g061600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g14230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g14230

Limit To All Plant Sequences

>Glyma19g14230.1   sequence type=CDS   gene model=Glyma19g14230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGAAGCTTGGCAACACGTCTCATGATCCTGAAGTGAGAAAGGGGCCATGGACAATGGAAGAAGACTTAATCTTGATCACCTATATTGCCAATCACGGGGAAGGGGTTTGGAACTCTTTGGCCAAGGCTGCTGGACTTAAACGTACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCCAAGCATCTACCCGGAAGGACTGATAATGAGATTAAGAACTACTGGAGGACAAGGATCCAGAAGCACCTCAAGCAAGCTTCCAGCAGCTTCCAGCAACAGAGTAGTAATTCTGAGATAATTTATCATCCCCAAGCTTGCACTAGCCAAGTGTCCACCATGGCGCAGCCCATAGAAACCTATTCTCCACCCAGTTATCAAGGAATGTTAGATCCATTTTCAATTCAGTTCCCAACAAATCCTCATCATTCTAGTTGTTGTACCAATGACGACGACAACAACAACTATTGGAGCATGGAGGATATCTGGTCAATGCAATTAGCCAATTACTGA

Predicted protein sequences of Glyma19g14230

Limit To All Plant Sequences

>Glyma19g14230.1   sequence type=predicted peptide   gene model=Glyma19g14230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKKLGNTSHDPEVRKGPWTMEEDLILITYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHLKQASSSFQQQSSNSEIIYHPQACTSQVSTMAQPIETYSPPSYQGMLDPFSIQFPTNPHHSSCCTNDDDNNNYWSMEDIWSMQLANY*

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