SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14660 | AT | Annotation by Michelle Graham. TAIR10: peptide deformylase 1B | chr5:4727129-4728671 REVERSE LENGTH=273 | SoyBase | E_val: 2.00E-89 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0042586 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptide deformylase activity | SoyBase | N/A | ISS |
| KOG3137 | KOG | Peptide deformylase | JGI | ISS | |
| PTHR10458 | Panther | POLYPEPTIDE DEFORMYLASE | JGI | ISS | |
| PF01327 | PFAM | Polypeptide deformylase | JGI | ISS | |
| UniRef100_B9GI48 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptide deformylase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GI48_POPTR | SoyBase | E_val: 3.00E-99 | ISS |
| UniRef100_I1N756 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N756_SOYBN | SoyBase | E_val: 3.00E-173 | ISS |
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Glyma19g14000 not represented in the dataset |
Glyma19g14000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g061900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g14000.3 sequence type=transcript gene model=Glyma19g14000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTATAAAAAATATTTTCCAACTTGAAGTTAGTATATAGAAAATCATCAAGTTCAAGTCTTGACCGGACAAACTAATCTCCATAAAATAATCTGAGTGACCCTCCTCACTTTGTGGCCATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGATCTTCAAGGTCAATATTAGGCATAATACTGAATGCACACTTACCAGACATTTCTAGTTTGAACTTCATAAAATGATGAAGCATAGATTACAGGTACTTCATATGGTTGGTTATGCTGGAGATGTATCATTTATATAATTATATGTATATAGAAAATGAGCTAGTGACTCTGATTATCATTATACTTATCGAGTTTTCTCTGGGTGGACTTCCTTGTCTAGGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCTATTGTCAGTTGTTCATGTTGCCCTGAAGGGAACAACTGTCTTGAAGGGCTATTTCCTACGTATTTATTTATTTATTGCTTTCTATTGTTTTAATTCTAGTTCTAAACATTTAGCTCTAGTTGTAGGCATTTACTATGTATTATTTTAGGATTTATTACTTGAAAACAGCTCATAGAATGGAGGAAAACCTTTCTTTATATGGCTCTCCCAATATCCCGAAAGCAATAATTGTTTGTAATATAAGGGGAAATTACACTGTAATAACTTGACAAGTCTTGAATGATTCTCATTTGAATCTTGATCTCATAAACTTGAATGAAAGTTCACAAATGTTGCACTTGATCTCATAAA >Glyma19g14000.4 sequence type=transcript gene model=Glyma19g14000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTATAAAAAATATTTTCCAACTTGAAGTTAGTATATAGAAAATCATCAAGTTCAAGTCTTGACCGGACAAACTAATCTCCATAAAATAATCTGAGTGACCCTCCTCACTTTGTGGCCATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGATCTTCAAGGTCAATATTAGGCATAATACTGAATGCACACTTACCAGACATTTCTAGTTTGAACTTCATAAAATGATGAAGCATAGATTACAGGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCTATTGTCAGTTGTTCATGTTGCCCTGAAGGGAACAACTGTCTTGAAGGGCTATTTCCTACGTATTTATTTATTTATTGCTTTCTATTGTTTTAATTCTAGTTCTAAACATTTAGCTCTAGTTGTAGGCATTTACTATGTATTATTTTAGGATTTATTACTTGAAAACAGCTCATAGAATGGAGGAAAACCTTTCTTTATATGGCTCTCCCAATATCCCGAAAGCAATAATTGTTTGTAATATAAGGGGAAATTACACTGTAATAACTTGACAAGTCTTGAATGATTCTCATTTGAATCTTGATCTCATAAACTTGAATGAAAGTTCACAAATGTTGCACTTGATCTCATAAA
>Glyma19g14000.2 sequence type=CDS gene model=Glyma19g14000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGAAGCATAG >Glyma19g14000.3 sequence type=CDS gene model=Glyma19g14000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGA >Glyma19g14000.4 sequence type=CDS gene model=Glyma19g14000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGA
>Glyma19g14000.2 sequence type=predicted peptide gene model=Glyma19g14000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLTCLRPTHPHLHRGSVLLAISNRCFNHSSLLNWILSVNPPRTAPPRAMAKPCSSPAQDLVASPGDFEFVLPLKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVGEHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARDINGTRFSVNLSDLPARIFQHEFDHLQGILFFERMTEEVLDSICGQLQEA* >Glyma19g14000.3 sequence type=predicted peptide gene model=Glyma19g14000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLTCLRPTHPHLHRGSVLLAISNRCFNHSSLLNWILSVNPPRTAPPRAMAKPCSSPAQDLVASPGDFEFVLPLKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVGEHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARDINGTRFSVNLSDLPARIFQHEFDHLQGILFFERMTEEVLDSICGQLQALETKYEGMTGLPSPEKIENRRRRKVAVGFGKR* >Glyma19g14000.4 sequence type=predicted peptide gene model=Glyma19g14000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLTCLRPTHPHLHRGSVLLAISNRCFNHSSLLNWILSVNPPRTAPPRAMAKPCSSPAQDLVASPGDFEFVLPLKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVGEHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARDINGTRFSVNLSDLPARIFQHEFDHLQGILFFERMTEEVLDSICGQLQALETKYEGMTGLPSPEKIENRRRRKVAVGFGKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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