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Report for Sequence Feature Glyma19g13770

Feature Type:gene_model
Chromosome:Gm19
Start:16846574
stop:16850774
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g13770
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40380AT Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 | chr5:16152121-16155038 FORWARD LENGTH=651 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF433Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF01657PFAM Domain of unknown function DUF26 JGI ISS
UniRef100_B9SF98UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SF98_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N753UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N753_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g13770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g13770 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g062300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g13770
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g13770
>Glyma19g13770.1   sequence type=CDS   gene model=Glyma19g13770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTCCAAAAGCTTCTCCTCATCAAATCCAAGCCACAACAAAAATAATTACCCATCATGGGTTCTCTTCACCACACTCTTACTCTCATCTCTATCCCTCACAGTTTCTAATCCAAGGATTACCGAGGCAGGGCTCTACTGTGGCACTAGCAAGGCCCCTCTGAAGGCCAACTACATCCCCAGCTTCATCAAGGAGATGGAGAGCCTCTCGCAGCTCGTCACCAGCAACAACTGGGGCACACACTCTGTAAAAATATCAGGCTCAGGCTCATCCATTCCCATTTACGGCTTCGCGCAATGCTTCCGCGACCTCTCCCACACCGACTGCCTCCTCTGCTATGCCGCGAGCCGCACCAGGCTCCCCCGCTGCCTCCCTTCCGTCTCGGCCCGCATCTACCTCGACGGCTGCTTCCTCCGCTATGACAACTACAGCTTCTATTCGGAAGGCACCGATCCTTCGAGGGACGCGGTGAACTGCACCGGGGTGGCTGCTGGTGATGAGGCTGAGAGGGTGGAGCTTCAGGAGAGAGTTGGAAGAGTGGTGGATAATGTGGTTAACATTGCTGAGCGTGATGGTAATGGTTTTGGTGTGGGAGAGGTTGAGGGGGTTTATGCTTTGGCTCAGTGCTGGAACACTCTTGGGAGTGGCGGGTGCAGAGAGTGCTTGAGGAAAGCTGGGAGGGAGGTGAAGGGGTGCTTGCCCAAGAAGGAAGGGAGGGCCTTGAATGCTGGCTGTTATTTGAGGTATTCCACGCAGAAGTTTTATAATGAGGATGGTGATGCAGGTGGTGGAAATGGGTTCTTAAGAAGAAGAGGAGTCATAGTAGCAGAAGTGTTAGCAGCAGCTGCAGTTATAATGCTCGCTCTCTCTGCCTCCTATGCAGCTTTCACAAAATTTTCAAAGATAAAAAAAGAAAACAATAATCTCGGTCAGATTTCCTCTTCCATAAGCAAATCTAGCTTGAATTACAAGTACGAAACTCTTGAGAAGGCCACAGATTATTTCAACTCCTCGAGAAAAGTAGGCCAAGGTGGAGCTGGTTCAGTTTTCAAAGGTATTCTCCCAAATGGGAAAGTTGTAGCTGTTAAGAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAATGAAGTGAATTTGATCAGCGGAATTGAACACAAGAATCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTACCCAAAAAGAGTTTAGACCAATTTATCTTTGAAAAAAACAGAACTCAGATTCTAAACTGGAAGCAGCGGTTTAACATCATTCTAGGAACGGCAGAAGGGCTTGCATATCTTCATGAAGGCACTAAAATAAGAATCATCCATAGAGACATCAAAAGCAGCAATGTTCTTCTGGACGAGAATCTCACTCCCAAGATTGCAGATTTCGGCCTTGCCCGGTGTTTTGGTGGTGATAAGTCACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTCGAGGACAACTTACAGATAAAGCTGATGTCTATAGTTATGGAGTACTTGTTCTGGAGATTGTGAGTGGCAGGAGGAATAATGTCTTCAGAGAGGACTCTGGCTCGCTTCTACAAACAGCTTGGAAACTATACCGATCAAACACATTAACCGAAGCTGTTGATCCTTCCTTGGGAGATGATTTTCCTCCATCGGAAGCATCAAGGGTGCTTCAAATTGGATTGCTTTGCACACAAGCTTCAGCTTCCCTAAGACCATCTATGTCCCAAGTTGTTTACATGCTAAGTAATACAAATTTAGATGTTCCCACACCAAATCAACCCCCATTTTTGAACACTGGAATGCTTGACTCAGATAGTTCCATTAAGTCTTATAGCACTAACAGCTTCATATCCAATGCCTTGAAGAAGATTGGAGTGTCCTACAGCTACTCAGAGTCCTCACGAAATTCAGATGGGCCATCAAGAAGTGAAGAATCAATTATCCAAGTTTGA
Predicted protein sequences of Glyma19g13770
>Glyma19g13770.1   sequence type=predicted peptide   gene model=Glyma19g13770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSKSFSSSNPSHNKNNYPSWVLFTTLLLSSLSLTVSNPRITEAGLYCGTSKAPLKANYIPSFIKEMESLSQLVTSNNWGTHSVKISGSGSSIPIYGFAQCFRDLSHTDCLLCYAASRTRLPRCLPSVSARIYLDGCFLRYDNYSFYSEGTDPSRDAVNCTGVAAGDEAERVELQERVGRVVDNVVNIAERDGNGFGVGEVEGVYALAQCWNTLGSGGCRECLRKAGREVKGCLPKKEGRALNAGCYLRYSTQKFYNEDGDAGGGNGFLRRRGVIVAEVLAAAAVIMLALSASYAAFTKFSKIKKENNNLGQISSSISKSSLNYKYETLEKATDYFNSSRKVGQGGAGSVFKGILPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGTAEGLAYLHEGTKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFGGDKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSYGVLVLEIVSGRRNNVFREDSGSLLQTAWKLYRSNTLTEAVDPSLGDDFPPSEASRVLQIGLLCTQASASLRPSMSQVVYMLSNTNLDVPTPNQPPFLNTGMLDSDSSIKSYSTNSFISNALKKIGVSYSYSESSRNSDGPSRSEESIIQV*






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